SLC9A3-AS1
Revision as of 12:13, 7 September 2017 by Jiabao Cao (talk | contribs)
Contents
Annotated Information
Name
SLC9A3-AS1:SLC9A3 antisense RNA 1
UC011CLY.2[1]
Characteristics
Uc011cly.2 is transcribed from the sense strand of chromosome 5 and is overlapping with the transcript of gene SLC9A3 (solute carrier family 9 member a3).[1]
Uc011cly.2 is a nature antisense lncRNA.[1]
Function
Uc011cly.2 may be involved in the regulation of target gene SLC9A3 and its product.[1]
Expression
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RT-qPCR validation reveals significant lncRNA expression differences in LSCC samples compare to the adjacent normal samples[1].
The expression of LncRNA Uc011cly.2 is significantly upregulated in early stage LSCC(lung squamous cell carcinoma).[1]
Diseases
Lung squamous cell carcinoma[1]
Sequence
>NR_125375.1 Homo sapiens SLC9A3 antisense RNA 1 (SLC9A3-AS1), long non-coding RNA
000001 CTGGCGTGGG CGAGGCGGGG CTCGGGGCTC GCGGTCGCTG TAGCCGCGCG GGGATCTGGG GTTTCTCTGG GACAGCGGCG 000080
000081 GCGGCGGTGG GCGGACCGTG GCGCGGGGAC GAGCGGCCGG TTAGCGGCGT GTCGGAGCCG GTGTCACCTG CGGGAGAGGA 000160
000161 AGGCGAGAGA GGGCAGCGGC TAGTCAGCCT TCGGAGAGCC CCACGGCGGC AGGGGAGACC TCGCCGGGGC CGTCACCTGC 000240
000241 TGGGTGCCTT GGAAAGTTAG GGTCACCGGG AAGGTTAGGG TCACGTGCCT TTCAGGTTGC GGGCCCTTCC CCCACATCCA 000320
000321 TGACCCCACA CGCCACAGGC AGCACAGCTT GGCCGCCTTC TTGTTCTGGT TGAGCCCCAG CTTGGTCGAC TTGAAGGACT 000400
000401 CCAGGCGCTT CCGCATGGTC CTGTGGAAGA TTTCCCGGTC CTGTTTCTCG TCCTCCGTGG GCGTGAGCTC GTGTCGGCTG 000480
000481 TACAGATGCT TGTACTGCGG GATCAGGCAC GGAGGTCACA GCTGTGCCCA CCGCCGGACA TTCTCGCCCT CCTGCCGCAG 000560
000561 GAGCTGAGCA CGGATCCCCC GTGGTCCCAG GAGGGGACGA GGAAGCCGCC CCACGGGGTC CCTGCGGGGT CCTCCAGCCC 000640
000641 CCAGCCCGCA GTGCCCACCT CCTGCCGCGG CTTGTACAGG CCAGGAGCCA CCACAGCCCT GTCTGTGACT CTCAGCTCCC 000720
000721 GAGGCTGGGC TCTTCCCCAG GGAAGCTGCA TGACCATGGC CACATACAGG AGGAGACCCT AAAACTCCAT TGGCCTCATG 000800
000801 TCCAGAACTG AATCAGCCAG TGCCAGAGCC TGCTGCAGCC CCGACCCGGC AGAGCAAGCG GCTCTGCTAC CTCAGCCACG 000880
000881 TAGCTGATGG CATCCTTCAG GTTCAGCTCG TGGAAGACAT TCAGGATCCG GTCTCGAGAC TTCTGGGCCG ACCGTCTCAT 000960
000961 GAGGACCCTG CTGAGGAACT TCCTGTCGAA GTGGGACCAC CTGTAGGGAC AGACCTTGGG TGTGAGCCTC AGGTGACAGG 001040
001041 CGCCCTAGAG CCCGCCGGAC GCGTGGCCCG GCCCCTTCTC TCCTGAATTT TGTTTGCTAT AGTGACCCTG TAGGCGCGTT 001120
001121 TAAAATGAGG GAAGCAGCCC CTGCCACACG CCCAGGCCGT CCGCCGTTCT CCCGCCTGTC CTGTTGGATG GAGGCCGTTA 001200
001201 GACGCATATG AAACTGCATG CCGCCTCCTC CAGAGGGTGG CTCAGGACAC GCCTAACGGA ATTAGAGTAT TCGCTGGTTA 001280
001281 TCCAGATCAG AAGGGACGGT GGCCTGGCCG GACTTAGAGG AAACTCTGGG GCACAAGGAG GTGATGCCTG TCACTTGGAC 001360
001361 ATGGGTGCAG CCGCCAGAGC CGCCCTCCAG GGCACAGGGT GGGCCCGGGT GAGCTTGTGT GCTCACACCT GGGCAGGCCC 001440
001441 CGCGGCAGCA ATGGCAGCTC TCCTGTACAG GCTGAGTTTC AGCCACACCA AGAAGTCAAA GCTAACCGAG GCTGTGCCTT 001520
001521 CCGAGACCCC CGGGATGGCC CCTGGGAGGC CAAGGAGTCG GGGACTGGGT ACCCGGAGCA GAGTCACTGT GGCCACGGAG 001600
001601 AACCGCAGCT GAGCTTTATG AAGCCACGTG GCCACACCTC CCGGTGCCTC CACCCCAAGC AAACACAGAT CGCTCAGAAA 001680
001681 ATGGGAACCC AGGGCAAATT GTATGTGCTC CTTACTGGGT TTATTATAAG TGTCACATGT TTTTTATAAT AAAACATAGG 001760
001761 TGATTTCACC TTAATGGACA AA
000081 GCGGCGGTGG GCGGACCGTG GCGCGGGGAC GAGCGGCCGG TTAGCGGCGT GTCGGAGCCG GTGTCACCTG CGGGAGAGGA 000160
000161 AGGCGAGAGA GGGCAGCGGC TAGTCAGCCT TCGGAGAGCC CCACGGCGGC AGGGGAGACC TCGCCGGGGC CGTCACCTGC 000240
000241 TGGGTGCCTT GGAAAGTTAG GGTCACCGGG AAGGTTAGGG TCACGTGCCT TTCAGGTTGC GGGCCCTTCC CCCACATCCA 000320
000321 TGACCCCACA CGCCACAGGC AGCACAGCTT GGCCGCCTTC TTGTTCTGGT TGAGCCCCAG CTTGGTCGAC TTGAAGGACT 000400
000401 CCAGGCGCTT CCGCATGGTC CTGTGGAAGA TTTCCCGGTC CTGTTTCTCG TCCTCCGTGG GCGTGAGCTC GTGTCGGCTG 000480
000481 TACAGATGCT TGTACTGCGG GATCAGGCAC GGAGGTCACA GCTGTGCCCA CCGCCGGACA TTCTCGCCCT CCTGCCGCAG 000560
000561 GAGCTGAGCA CGGATCCCCC GTGGTCCCAG GAGGGGACGA GGAAGCCGCC CCACGGGGTC CCTGCGGGGT CCTCCAGCCC 000640
000641 CCAGCCCGCA GTGCCCACCT CCTGCCGCGG CTTGTACAGG CCAGGAGCCA CCACAGCCCT GTCTGTGACT CTCAGCTCCC 000720
000721 GAGGCTGGGC TCTTCCCCAG GGAAGCTGCA TGACCATGGC CACATACAGG AGGAGACCCT AAAACTCCAT TGGCCTCATG 000800
000801 TCCAGAACTG AATCAGCCAG TGCCAGAGCC TGCTGCAGCC CCGACCCGGC AGAGCAAGCG GCTCTGCTAC CTCAGCCACG 000880
000881 TAGCTGATGG CATCCTTCAG GTTCAGCTCG TGGAAGACAT TCAGGATCCG GTCTCGAGAC TTCTGGGCCG ACCGTCTCAT 000960
000961 GAGGACCCTG CTGAGGAACT TCCTGTCGAA GTGGGACCAC CTGTAGGGAC AGACCTTGGG TGTGAGCCTC AGGTGACAGG 001040
001041 CGCCCTAGAG CCCGCCGGAC GCGTGGCCCG GCCCCTTCTC TCCTGAATTT TGTTTGCTAT AGTGACCCTG TAGGCGCGTT 001120
001121 TAAAATGAGG GAAGCAGCCC CTGCCACACG CCCAGGCCGT CCGCCGTTCT CCCGCCTGTC CTGTTGGATG GAGGCCGTTA 001200
001201 GACGCATATG AAACTGCATG CCGCCTCCTC CAGAGGGTGG CTCAGGACAC GCCTAACGGA ATTAGAGTAT TCGCTGGTTA 001280
001281 TCCAGATCAG AAGGGACGGT GGCCTGGCCG GACTTAGAGG AAACTCTGGG GCACAAGGAG GTGATGCCTG TCACTTGGAC 001360
001361 ATGGGTGCAG CCGCCAGAGC CGCCCTCCAG GGCACAGGGT GGGCCCGGGT GAGCTTGTGT GCTCACACCT GGGCAGGCCC 001440
001441 CGCGGCAGCA ATGGCAGCTC TCCTGTACAG GCTGAGTTTC AGCCACACCA AGAAGTCAAA GCTAACCGAG GCTGTGCCTT 001520
001521 CCGAGACCCC CGGGATGGCC CCTGGGAGGC CAAGGAGTCG GGGACTGGGT ACCCGGAGCA GAGTCACTGT GGCCACGGAG 001600
001601 AACCGCAGCT GAGCTTTATG AAGCCACGTG GCCACACCTC CCGGTGCCTC CACCCCAAGC AAACACAGAT CGCTCAGAAA 001680
001681 ATGGGAACCC AGGGCAAATT GTATGTGCTC CTTACTGGGT TTATTATAAG TGTCACATGT TTTTTATAAT AAAACATAGG 001760
001761 TGATTTCACC TTAATGGACA AA
Labs working on this lncRNA
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Science, Shanghai 200050, China.
