SOX2-OT
Contents
Annotated Information
Approved Symbol
SOX2-OT
Approved Name
SOX2 overlapping transcript
Previous Symbols
SOX2OT
Synonyms
DKFZp761J1324, NCRNA00043
Chromosome
3q26.33
RefSeq ID
NR_004053
OMIM ID
616338
Ensembl ID
ENSG00000242808
Disease
Esophageal squamous cell cancer, Alzheimer's disease,Neurodevelopmental syndromes associated with the SOX2 locus
pubmed IDs
12612584, 19767420
Sequence
>gi|449020153|ref|NR_004053.3| Homo sapiens SOX2 overlapping transcript (SOX2-OT), transcript variant 4, long non-coding RNA
000001 AAAAATGTTG AATATCAACA ATGGGTTTCA GTGCTGTATT GTTGAGTTTT GTATGAACTA ATCTAGCTTC TCTAAAAAAA 000080
000081 AAAAAAAAAA AAAAAAAAAG AAAGAAAAGA AAGAAAGAAA AGAAAGAAAG AAAGAAAAAA AAAGAAAAGA AAAAAAAGAG 000160
000161 AACCACAGCT TTGGACAAAA GTCTATAGCC AGTGCATTTG AAAACTCCCC TTGCACCAGG GCTGACTGTA GCTGGGGGAA 000240
000241 GACATTTTAC TCATTTGCTC TTTCCTTTCA TACAGTCAGC TGGTCCCTCT TCTCAGGTGT AGATCACCTA TTATAATTTT 000320
000321 ACCTAATTTT GATACTCTGA TAAGGAAAGT CCCAGGACTT ATCAGCTGGG ATAGGCCTCA CTTACAAGAC AGCTCTGTTC 000400
000401 AGTATTTGGA AGAAAGCCTG ACAGGTTTCT TCGGAAAAGT GGCCATCCAT GGAATGAATG AAATGTTCTC TTTCTATTCC 000480
000481 AGGGATTGCA GTGGCAAAGC TAGGCTAGGT CTTGGAGGCT GGTGTAAGGC GATGTGGGTG AAGGCAGGAG GCTGATGGAA 000560
000561 AGACTGGGGG GAAGAAAAGC CGAAATGGAT TCACGGTGCC TTGGATGAAG GACGAGAGGG GAACTGCAAG CTCCTTCAAC 000640
000641 TGGTTCTGTC CGGTGAGAAG TGATCAAGCT TGGGCTGACA AGAGGCTCAG GGAGCCCTCA CGTTCTTTCG CTTTTTTACC 000720
000721 TGCCAATCAA ACTGCTACAA GACAACACCC TGATCTGGCA TGGACATCGC GGGTCCAAGC CTGTAGCCCC AAATCGGATA 000800
000801 ATCTCTGCAG CTGATAACAA GCAAAAGAGA AGCCAGGCAA CAGCCATATT AAAGAAGAAA ACAATCAACT CTGAGATCCA 000880
000881 ACTTAGAAAT AATGTTTCAT TCAAGATAAG GCTCGTGGCT TAGGAGATTG TGACCTGGCT TGCATCATTC TAAGACTTCT 000960
000961 ATCGTCTGTT TTCAAAACCC AAGGAGGACC TCCTTTTCTG TGTGATAGTT CCTCATGCTT TGCCAGCCAC TGGGTCTTTA 001040
001041 AGGAAGCTTG CCAAGAGTTC CCGGCTGGGA AGGACAGTTC GAGTTCATCA TAGACAATGA GCTGGCACCA CAGTTTAAGT 001120
001121 GACTCACCAA CCTGGTTGCC CACTTCAAAA TGTCAAGAAC CACACTATCT AATTGAAAGA ACTGTGTTTT AGCAAAGTGT 001200
001201 AATTGGATCG CCTGGCAAGA TCATCTCAAA CTATGTCTCT GACCTTGCCT TTCAGTGGCT ATTTTGAGCA CAAGAGGAGA 001280
001281 AAGGAAATGA TTCCTGAATT ATATCTTGTT TTTAAAAATT AAGATTAATT AATACTTGGT TTTATGTTCA TTCCATTGTA 001360
001361 GGAACTTAGT GATTATTACA AAACAGTCAA AATAGGTCAT AGCAAAATGA ACGTTTAAGA TTAGGTTAAA ACATTCCTCT 001440
001441 GAAATTTTAG TATTCACTTT TGAAGTGTCA ATTACTATAT TTCTGTAATT TCTCATTTTT TTCTTGGCTT AGAGTCAAGA 001520
001521 TGAAAAATGA TATTTGAATC AAAGACATTG TTTTGTTATA TAGCCACTCC TTTCTAAAAT GCAAATCCAC CCTCCCCTCA 001600
001601 CCAATGCTTT ATTCTTTGTG CGCGCACACA CACACACACA CACACACACA CACACACACA CACACAGACA TACACAGAAC 001680
001681 CAGCACCCAA ATGGTAGAGG AGGTCCTTCC AAGACTTCTA GGACCTGGAT CATGTAAGCA GTAGATGAGA AAATGAAGTA 001760
001761 AGAGATATAG AGTAATAACA ATAAAAGTCA ATGATTTCAT TTTACAAAAA AGTCATTGTG TAGTACTCAG ATATTTTTAA 001840
001841 GAGCAAGTAT TATTATGACT AAAGTATATT ATACTTCTAA ATTATTATGA TTCTCATCTA ATTTCAAGCC ACACATAGGC 001920
001921 GCCATTTGAA AGCATTTTGT GTTACAACCT ATCAACAAAA ATCAACTAAT AGTTTTATAA CGTGCATAGG TTTACCCCAT 002000
002001 GGGGAATTAA AATTTTTATC TGCAAGTATT TCTGTTGTTG TGAGACTTTA GGACAAGACA ACATTTGGTG TTAACATAGA 002080
002081 AGAATATTCT ATGGCTTTTT TAGCTTTAAA GTTCATTACT CTAAAATAAA GTACACGTGG TATTTTTTTC TTCCTAGTGT 002160
002161 TCTCTTATTA TATGTAGAGT ATTTTCGGTT GTTGTTTTTA ACGTATACAT TATTTTTATT AAGTCATTTC ATAAAAGATA 002240
002241 AGATATA
000081 AAAAAAAAAA AAAAAAAAAG AAAGAAAAGA AAGAAAGAAA AGAAAGAAAG AAAGAAAAAA AAAGAAAAGA AAAAAAAGAG 000160
000161 AACCACAGCT TTGGACAAAA GTCTATAGCC AGTGCATTTG AAAACTCCCC TTGCACCAGG GCTGACTGTA GCTGGGGGAA 000240
000241 GACATTTTAC TCATTTGCTC TTTCCTTTCA TACAGTCAGC TGGTCCCTCT TCTCAGGTGT AGATCACCTA TTATAATTTT 000320
000321 ACCTAATTTT GATACTCTGA TAAGGAAAGT CCCAGGACTT ATCAGCTGGG ATAGGCCTCA CTTACAAGAC AGCTCTGTTC 000400
000401 AGTATTTGGA AGAAAGCCTG ACAGGTTTCT TCGGAAAAGT GGCCATCCAT GGAATGAATG AAATGTTCTC TTTCTATTCC 000480
000481 AGGGATTGCA GTGGCAAAGC TAGGCTAGGT CTTGGAGGCT GGTGTAAGGC GATGTGGGTG AAGGCAGGAG GCTGATGGAA 000560
000561 AGACTGGGGG GAAGAAAAGC CGAAATGGAT TCACGGTGCC TTGGATGAAG GACGAGAGGG GAACTGCAAG CTCCTTCAAC 000640
000641 TGGTTCTGTC CGGTGAGAAG TGATCAAGCT TGGGCTGACA AGAGGCTCAG GGAGCCCTCA CGTTCTTTCG CTTTTTTACC 000720
000721 TGCCAATCAA ACTGCTACAA GACAACACCC TGATCTGGCA TGGACATCGC GGGTCCAAGC CTGTAGCCCC AAATCGGATA 000800
000801 ATCTCTGCAG CTGATAACAA GCAAAAGAGA AGCCAGGCAA CAGCCATATT AAAGAAGAAA ACAATCAACT CTGAGATCCA 000880
000881 ACTTAGAAAT AATGTTTCAT TCAAGATAAG GCTCGTGGCT TAGGAGATTG TGACCTGGCT TGCATCATTC TAAGACTTCT 000960
000961 ATCGTCTGTT TTCAAAACCC AAGGAGGACC TCCTTTTCTG TGTGATAGTT CCTCATGCTT TGCCAGCCAC TGGGTCTTTA 001040
001041 AGGAAGCTTG CCAAGAGTTC CCGGCTGGGA AGGACAGTTC GAGTTCATCA TAGACAATGA GCTGGCACCA CAGTTTAAGT 001120
001121 GACTCACCAA CCTGGTTGCC CACTTCAAAA TGTCAAGAAC CACACTATCT AATTGAAAGA ACTGTGTTTT AGCAAAGTGT 001200
001201 AATTGGATCG CCTGGCAAGA TCATCTCAAA CTATGTCTCT GACCTTGCCT TTCAGTGGCT ATTTTGAGCA CAAGAGGAGA 001280
001281 AAGGAAATGA TTCCTGAATT ATATCTTGTT TTTAAAAATT AAGATTAATT AATACTTGGT TTTATGTTCA TTCCATTGTA 001360
001361 GGAACTTAGT GATTATTACA AAACAGTCAA AATAGGTCAT AGCAAAATGA ACGTTTAAGA TTAGGTTAAA ACATTCCTCT 001440
001441 GAAATTTTAG TATTCACTTT TGAAGTGTCA ATTACTATAT TTCTGTAATT TCTCATTTTT TTCTTGGCTT AGAGTCAAGA 001520
001521 TGAAAAATGA TATTTGAATC AAAGACATTG TTTTGTTATA TAGCCACTCC TTTCTAAAAT GCAAATCCAC CCTCCCCTCA 001600
001601 CCAATGCTTT ATTCTTTGTG CGCGCACACA CACACACACA CACACACACA CACACACACA CACACAGACA TACACAGAAC 001680
001681 CAGCACCCAA ATGGTAGAGG AGGTCCTTCC AAGACTTCTA GGACCTGGAT CATGTAAGCA GTAGATGAGA AAATGAAGTA 001760
001761 AGAGATATAG AGTAATAACA ATAAAAGTCA ATGATTTCAT TTTACAAAAA AGTCATTGTG TAGTACTCAG ATATTTTTAA 001840
001841 GAGCAAGTAT TATTATGACT AAAGTATATT ATACTTCTAA ATTATTATGA TTCTCATCTA ATTTCAAGCC ACACATAGGC 001920
001921 GCCATTTGAA AGCATTTTGT GTTACAACCT ATCAACAAAA ATCAACTAAT AGTTTTATAA CGTGCATAGG TTTACCCCAT 002000
002001 GGGGAATTAA AATTTTTATC TGCAAGTATT TCTGTTGTTG TGAGACTTTA GGACAAGACA ACATTTGGTG TTAACATAGA 002080
002081 AGAATATTCT ATGGCTTTTT TAGCTTTAAA GTTCATTACT CTAAAATAAA GTACACGTGG TATTTTTTTC TTCCTAGTGT 002160
002161 TCTCTTATTA TATGTAGAGT ATTTTCGGTT GTTGTTTTTA ACGTATACAT TATTTTTATT AAGTCATTTC ATAAAAGATA 002240
002241 AGATATA