ENST00000357401.3

CYYR1-AS1 is a long transcript overlapping with CYYR1 as antisense RNA.

Annotated Information

Name

CYYR1-AS1:cysteine/tyrosine-rich 1 antisense RNA 1(HGNC nomenclature)

Characteristics

CYYR1-AS1 is on the opposite strand compared to CYYR1 and its four exons sequences are in correspondence of CYYR1 intron sequences. It was classified in GenBank as moderately similar to a transposase and was obtained by the NEDO human cDNA sequencing project from the NT2 neuronal precursor cell line. ^[1].

Function

The CYYR1-AS1 expression in normal human tissues studied seems to suggested that a fine regulation of the locus may occur in different kind fo tissues.^[1]

CYYR1-AS shows correlation with CYYR1-1,2,3,4^[1].

Regulation

CYYR1-AS1 could regulate the CYYR1 locus as a putative non-coding RNA (ncRNA), classifiable as a long non-coding RNA (lncRNA, greater than 200 nucleotides in length)^[1].

Expression

qRT-PCR analysis of CYYR1 and CYYR1-AS1 in different human normal tissues.^[1]

CYYR1-AS1 is absent or significantly less expressed according to ANOVA analysis, heart, colon, placenta,except for brain^[1].

Labs working on this lncRNA

Department for Life Quality Studies, University of Bologna, C.so d’Augusto 237, 47921 Rimini, RN, Italy^[1]

References

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Casadei R, Pelleri MC, Vitale L, Facchin F, Canaider S, Strippoli P, et al. Characterization of human gene locus CYYR1: a complex multi-transcript system[J]. Molecular biology reports. 2014,41(9):6025-38.

Basic Information

Transcript ID	ENST00000357401.3
Source	Gencode19
Same with	lnc-GABPA-4:2,NONHSAT081541,CYYR1-AS1
Classification	antisense
Length	3412 nt
Genomic location	chr21+:27778262..27941571
Exon number	4
Exons	27778262..27778447,27875901..27876021,27922638..27924446,27940276..27941571
Genome context
Sequence	000001 AGGTGTCGAA CCCAAGGGCT CTTCTCAGCA GAGTGTCTGC ATGCCACACT CTGCTTTAGA GTCTGTTCCC TGGGGAACAC 000080 000081 AACCAGAGAC TGAAATAATT GGTGGGCAGT GGGGAGCACA AAGGGCTGTT TTTGTTTCAT GTGAAGACGA TGAGCATGCT 000160 000161 ATGAACCCCG AAGAGCTGTT GTATAAAGTA TCTGCCTGGA AACCCTGTTG CCTGGAGACC ACTCTTGAAG AACATCCACT 000240 000241 GCTGTGGCCT CTTAAAGATT TAAGACATCT AATGAACAGC TGACAGAAAT CATCAATTTG CTCCTCAGCC TCCCTCCTCC 000320 000321 CTGAAACACA AAAACATTGA AATTAGGCCA ATTAATAACT CTACAATGGC CTCTAAGAGT TAAAATGAAA GGAAGTGTAA 000400 000401 AATGGTTTCT CACTTGAAAT CAAAAGCTAG AAATGATTAA GCTTCGTGAG GAAGGCAAGT TGAAAGCTGA GACAGCCAAA 000480 000481 AGCTGACTCC CGCACCAGGG AGCCAAGTTG TGCAAGCAAA GGAAAAGTTC TTGAAGGAAA TTAAAAGTGC TGCTCCAGTG 000560 000561 AACACATGAA TGATAAGAAA GCAAAAGTGA TCTGGGTAGA AGATCAAACC AGCCACAACA TGCCCTTAAG CCAAAGCCTA 000640 000641 ATCCAGAGCA AGGCTTTAAC TCTCTTCAAG TTTGTGAAGA CTGAGAGAGG TAAGGAAAGT GCAGAAGGAA AGTTAAATGC 000720 000721 TAGAAGAGTC GGTTCAGGAG GTTTCAGGAA AAAGCCATCT CCACAAATAA ACATACAACG CGAAGCAACA AATGCTGATG 000800 000801 TAGAAGCTGT GGCAAGTTTT CCAGAAGAGC TAGCTCAGAT CATTGATAAA CGTGGCTACA TTAAACAACA TATTTTCAGT 000880 000881 GTGGATGAAA CAGAGTCCTA TTGGAAGAAG ACACCATCTA GGACTTTCAT AGCTACAGGG AAAAGTCAAT GACTGGCTTC 000960 000961 AAAGCTTCAA AGAACAGGGT GACTCTCTTG TCAGACACTA ATACAGCTGC TGACTTGAAG TTGAAGCCAG TGCTCACTGC 001040 001041 ACATTCTGAA AACTTAAGGA TCCTTAAGAA CTGTGCTAAA TCTACTGTGC CTATGTGCAA CAAAGCCCTT ATGGCAGCAT 001120 001121 GTCTGTTTAC AGTATCATTT ACTGAATATT TGAAGCCTAC TACTGAGAAC TACTGCTCAG GAAAAAAGAT ACTTTTCAAA 001200 001201 ATAGTACTGC TCTTTGACAA TGGACCTGGT CACCCAAGAG CTCTGATGGA GGTGTGCAAG GAGATGAACG CTGTGTTCAT 001280 001281 GCCTGCTAAC ACAACACCCG TTCTGTACTC CATGGATCAC AGAGTAATTT TGACTTTCAA GTCTTATTAT TTGAGAAATA 001360 001361 AATTTTGTAA GGCTATAGCT GCCACACATA GTTATTCCTG TGATGGATCC GGGCAAAGTA AATTGAAAAC CTAGAAAAGA 001440 001441 GTCACCATTC TAGATGTCAC TAAGAACATT TGTGATTCAT GGGAGGAGGT TAAATTATCA ACATTAATAG AAGTTTGAAA 001520 001521 GAAATTTATT CCAGCCCTCA TGGATGACTT TGATGGGTTC AAGACTTTGG TAGAGGAAGT AACTGCAGGT ATAGTGATAA 001600 001601 TATCAAGGAA ATTAGAACTA AAAGTGGAGC CTGAAGATGT GACTGAATTG CTTCAGTCTC ACGATAAAAC TTGAACATAA 001680 001681 CAGCAGTTAA TTCTTACGGA TTAGCAAAAA AGTGGTTTTG TGAGATGGAA TCTATTCCTG GTGAAAATGC TGTGAACACT 001760 001761 GTGGAAATGA CAACAAAGGA TTTAGAATAT TACATAAACT TAGTTGATAA AGCAGCAGTA GGGTTTAGAA GGATTGACTC 001840 001841 CAATTTTGAA AGAAGTTCTA CGGTGGGTCA AACGCTACCG AAGAGCGTTG CACGCTATAG AGAAATCTTT CATGAAAGGA 001920 001921 GGAGTCAACT GATGTAGCAG ACTTCACTGT TGTCTTATTT TTAAAAATTT CCACAGCCAC CCCAATTTTC AGCAACCACC 002000 002001 ACCTTGATCA GTCAGCAGCC ATCAGCATCA AAGCAAGACC CTCTTCCAGC AAAAAAATTA CAACAACTTG CTGAAGGCTC 002080 002081 GGATGATTTT TAGCAACAAA CTATTTTAAA ATTAAGAT

[ref1-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Casadei R, Pelleri MC, Vitale L, Facchin F, Canaider S, Strippoli P, et al. Characterization of human gene locus CYYR1: a complex multi-transcript system[J]. Molecular biology reports. 2014,41(9):6025-38.

[1]