NONHSAT023443

From LncRNAWiki
Revision as of 16:16, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023443

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3871 nt

Genomic location

chr11-:85389665..85393535

Exon number

1

Exons

85389665..85393535

Genome context

Sequence
000001 GTTTGATCCT TATTTGCCGT TTTGGAGATC CTAAGTCGTC AGATATGGGC CATTTTATAA GGTTCACCCT AATGCCCTTT 000080
000081 CGAAAAATTT TGAAAGTGGG AAATGAGAGT AGAAAGCCAA AGATAGATGC CTCTGAAGAA CAACCGAAGA AGAGCCCACA 000160
000161 ACATAGACTA AGAGAAATGT GCACCTATCA TGTGTCAAGG TGCTtttcat tccaccctca taacaacttt tcaagggagg 000240
000241 ttcaattatc gcaattttac ggatgaaaaa aaagggagac taagagagga tgacttgtcc aaagccagga aggtttggag 000320
000321 aggcaaaagt gagttttgaa cctaaggccc tgGGTATGCC GCCTACACag gcccccacac ctggtttaat gctcactgtt 000400
000401 gctgtcgcga aattcttatt tattttttaa caagcggccc catattttat tttttgttct gggtactatc aaggaagtag 000480
000481 ctgggcctgT TTTCTGGCTC TAAAACCCGT GCTTTCTCCC AGTATACAAA CTATTCTTCT TAAGAGCCTT AAAAAGGCAT 000560
000561 TGTTTTCTTC CTCTGTGCTC CGTGGTACTT TGTATTCCAC TCTGTCAGTC CTCATATTTA ATCTGTGACC CAGAGCCTAT 000640
000641 TAAGGGGATA AGCAACCAGT TTATCTATTA TGGTATGTTG CTCTATTAAG TGATGCTTAT CACTGGAACA AACTGACAAA 000720
000721 ATGTAAATCG GCCTCCTCCA AACTACTGCC TTTGAGGGGA AATTTAAACA ACAACACTGT TTTCTAAAGC AGACCTATAT 000800
000801 CCCTGCTGAA TTTTTCTGCA ACATCAACAA ACAGTAGCTC TCAAACAAAA GCAGAACAGA GATCCTAAAA GCAAATAATG 000880
000881 TATGAGTAGT GCCGTGTAGC TGATAGGTGT GACTTTTTGT TCCTTAAACT GTGAGCTCTT CAGGGTGCCC TAAGGAACTT 000960
000961 GTCTGGTTCC AAAAAATTAT GAAAGAGAGC TTGAAAAGAG GAGAGCTACA GGAGAAATGA ACTGACTGGT ATTTTCAGAA 001040
001041 TACTGACTCT GCTTCAGTTA GAGAAAATGA ATTCAAGTTA GTTTGTTTCT AGTAAACAAA ATATTAATAG AAAATCTTTG 001120
001121 TCAACCTGAC TCCatatatt aaataattat ttaaaGAAAG TTGTTTGAAG GAGTACCTGC CCAGGTGCCT GCTGTTCTAC 001200
001201 TCAGCCCTCC TTTCCCCAGA TACCCATGAG GTAGCTGTGG GCTGAGTCAG GTCAGGGATA TTCTGCTTTC CACTGTGACA 001280
001281 AGACCAGCAG AGTTGGGCAG ACTTGAGATA TCACCTCTTG GTCCACAAAG AAAAGAGGAT GATGACTCTT AACTGCTCCC 001360
001361 CTAAAAGCCT ACCCTCCccc tccagacagc ttgtctgcca gtgtcattgg ccaaaattgg gtcatatgca aatacctcag 001440
001441 ccaagcttct tcatagggca tgttgccagc atgattgatt tagaccaatc aggatccacc ctgagatggg aatgaggcca 001520
001521 gtctgtgcta catagtggac gggactacct ggcaaaggca gggctctgcc agcaggaatg atggaggatg gatattggat 001600
001601 ggaccatcaa tagtgcctTC TGTGCTACAT CTATTTAGAC TGCCAGAGCC TTATCAGGCA GGGAGCCTTT TTAAATCCTT 001680
001681 AATCACAAGT CTTGGCCTCT TAAAAAAGTT ATTGGAATTT GGGGAAGTGG CTGAGAATAA GCTTTTCTAA TCATTGTGTA 001760
001761 TTCCTAAGGA CAAATTGGAT GTTATTTTCT AAACACTAAA AACATTAAAC TTAGGGACAC CTAGAGCTGT ACAGATGAGT 001840
001841 CTCCCTACTT GATGCTGTTC TCTCTAAAAC CTTCTGTTTA TTCCACTTGG GAAAAATGAA TCCAAGAAAA AACTTGTTCT 001920
001921 TGCACAGATC TGTCTGGTCA TTCATTACAC ATTCAACTGA CTACGGTGCC CTCACAACAC CCTTACTCCC CAGTCCCACA 002000
002001 GAGGGACTCC TGCCTTAGCT ACTTGCCAGA CAGTTCCCAC TTGATGATCT AATCCACTCT TATTTGTACT AGTCTAAAAT 002080
002081 AATCTTCACT TTCatgttta aggttattca ttacatcatt gttacagcaa aagattggaa atagcttaca taccatcaat 002160
002161 agggaacagg ttatatacca tcaataggga acaggttcac actttggaac acagtgcaac tgtaaaacaa aaggaaaagg 002240
002241 aagctgttaa tgtattgata tagaactatc tccaggatat atgcagaaaa aaacacaaca agctatagag caatatccat 002320
002321 attatactat attctgtgta agggggagag gaGGAGAGGG GTATTAGCAT GCAAACATTT CCAGCTGCAT AAATGAATAT 002400
002401 TGGGAAAAAA GTTGTTCTTA GTGGTGTGGA AGCATATAGG GAATGAGGTG GTCAGGGTTA GGAATGGGAA AGAAACTTCT 002480
002481 TAATGTATAC CATTTTATAT CATTTGACTT TTGAACTATG TGAATATATT ACCTATTCAA AATATAGTAA AATTGAAAAC 002560
002561 AAAAATAAAA GAATCTTCCA CATATCTGTT TAACTTCCCA ATAAGCTATA TTTCTGTTTA GGCAATTCAA AAGCCTGCAC 002640
002641 ATTTTCCCCT CTCCAAGAAC TGGGTAGGCA CGGCATATTT TAGATAAAGC CAAATATGGC CTGACAGATC TGGGTCAGGA 002720
002721 CATTCAGCTG GAAGCTGCTG CTTCCACAAA TGTTCAACCA CATATGGCTA ATGACAATAT CTTTTTCGTC CCTAAAGAAT 002800
002801 GCCTCCCAAT GATTAGTATT TCTCTCCTAG AGGTTTGGAT GTGTTAGCTT CTCTCATGGA TTTTCACGTG TCTGTATAAA 002880
002881 TCTTAGATTT TAGAGAGCCG GTTTTCTTAT ATACTCAAGC TTTTAGGATT TTGGTATTCA TTTTTGTTTT TATGCTGACA 002960
002961 TACCAACAAA AGGTAGTGGA GGTAGATCAG CCATTCTGAT CTTTCATTTC TGATCTTTCT GATCCTAATT GCTAACTCAT 003040
003041 TCACTGAATA TATTGcatta atttaacaaa tatttattga gaatctatta gccaagacac tatgctaagt ggtaggatac 003120
003121 aatgtgagca agatagagac cttatcttca ctgactttgc atccttctgg atgagaaaca tgctgaacaa taggaggaca 003200
003201 tggaagtgca tagcaggttc ctccagccta atgtaggagt gattagagga cgcttttcct ggaagtggat gtaaggtatc 003280
003281 tgtagaatgt gtaaagactg tccaagagaa gaggAAAACA TGAGAGTACA GTAGCTTCGA AAGCTTCACA GTACCTCCTG 003360
003361 TTCCTGATCA AGAAAACTGC CTTTCCAACA GCTGTACCAT TCAGGGCTGC AGAATAAGCA GCTCCAAATA GACTCAAGAG 003440
003441 ATTCTCTGGC CAGATTAATC CCATTATGCT CACATCCACA TTTACCTTAG TCCTTTCCAG AAGTCTGAGC CTTCATAAtc 003520
003521 ttactcaatc cttcccctcc cccaccacca ttcccatgca aactctttga gagagccctt tggaaactca gatctatgat 003600
003601 cagcaaaCCA GCTGAagtat tagtgcagta agcaaaaggg tgcattggca taagactgcc tagatttaaa tcctggctgt 003680
003681 tactgggtga ccttAAATTA GGTCTTAGTG GGTGAAGAGG TACCCAGAAA GCTAAAATCT TCAGTAAGGA AGAGATATAA 003760
003761 GGATGACATG GCATGAATTT CAAATTGGTA TAACCATACA AACAAAAGAA TTATCCAAAA GGCTTTAGAA AACAGTATTT 003840
003841 TCAATGAATA TCCTTAATGG AGTATATTCC A
[back to top]

Predicted Small Protein

Name NONHSAT023443_smProtein_44:265
Length 74
Molecular weight 8767.0172
Aromaticity 0.123287671233
Instability index 57.8124657534
Isoelectric point 10.0221557617
Runs 11
Runs residual 0.00653999116217
Runs probability 0.0477509595157
Amino acid sequence MGHFIRFTLMPFRKILKVGNESRKPKIDASEEQPKKSPQHRLREMCTYHVSRCFSFHPHN
NFSREVQLSQFYG
Secondary structure LLEEEEEELLLHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLEEEEELLLL
LLLEEEEEEEELL
PRMN -
PiMo -