NONHSAT139762

From LncRNAWiki
Revision as of 23:01, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT139762

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2410 nt

Genomic location

chrY+:27535139..27537958

Exon number

2

Exons

27535139..27537421,27537832..27537958

Genome context

Sequence
000001 TACTCAGCCC CCAGGCCTGC GTTCAGTGAG GCCTCCCGTG GCGTCAGCAT GTTCGTGTGG AGCAATGTGG AAGGTCACTC 000080
000081 TGTGGCCATG TTCCCCTGGT ACTCCATCCC CTTCCTGAAC CCTCCCTGCA GCCACACGAG GCCCAGCAAC CTGCCAGTCA 000160
000161 CTCAGTGGCC TCCAACCAGA GAAAACAACC TGCCAAGTTG GCAGCTGTTG CTCACGAGCA TCCACCAGGT GGGACAGGGA 000240
000241 GTGTTGACCC TGGGCGGCCC CCTGGAGCCA CCTGCCCTGA AAGCCCAGGG CCCGCAACCC CACACACTTT GGGGGTGGTG 000320
000321 GAACCTGGTA AAAGCTCATC TCCCACCATG GAGGAGGAGC CCTGGGCCCC TCAGGGGAGT CCCTGCTGGA CAGTGAGACA 000400
000401 GAGAATGACC ATGATGATGC TTTCCTCTCC ATCATGTCTC CTGACACCCA GTTGCCTCTA CCACTCAGAT GATGTCAGGC 000480
000481 CCAGTTCCTC AGTGCCCTGC ACAAGGAACA GGGCTCATCT TCTGAGAAGG ATGGACGCAG CCCCAACAAA TGGGACAAGG 000560
000561 ACCACATCCG GTGTCCCATG AGTGGCGGTC ATGATCTTCA GCAAGCGGCA CCAGGCCCTG GCAGGGCACA CCAGGGTCAC 000640
000641 CCCAACCAGG ATAACTGGAC CGTCAGCCAG ATGCTGAGCA AGTGGTGGTA CACCCTGGGG CCCAATGAGA GGCAGAAATA 000720
000721 CCATGAACTG GCCTTCCAGG TGAAGGTGGC CCACTTGCAA TAAGGACTGA AAGAAGTTCA GCTCAGAGGC CAAGCCCACA 000800
000801 AGCCAGGGGC TAGCAGGAGT GTAACAAAGG CTCGTGGGAG TGGAGCATGT CAGAGACTGG CACTGCCACT GCCCCTGGGG 000880
000881 TGTCCTCTGA ACTCCTGTCA GTTGCAGCCC AAACACTCCA GAGCTCGGAT ACCAAGGAGC AGCTTCTGTG GGGCAGAATG 000960
000961 GCTGCACACA GTCAGGGAAC CTGGCTCAGC CTGGCCCAAG CCTTCTCCCA CAGGGGGGTA CACAGCCTGG ATGGCAGGGA 001040
001041 AATAGACCAT CAGGCACTAC AGGAACTGAC ACAGGTGGTA TCTGGCACTG CATCATACTC TGGCCCAAAG CCTTCTACTC 001120
001121 AGTATGGAGC TCCAGGCCAC TTTGCAGCCC CTGGTGAGGG AGGTGACCAG TGGGCAGCCC TGCTGCTGCC CACCTGAGCT 001200
001201 GGTCATTCCC AGCACATGGC CAGTGAGGAC ATAGCGAGTG ACAAGGAGCA CACGGTCATC CATGAGGAAT AGGGTGTGAT 001280
001281 GATGTCATTG CTGATGATGG CTTTAGCACC ACTGACACTG ATCTCAAGTT CAAGGAGTGG GTGACCGACT GAGAGTGGGG 001360
001361 ACAACTCTGG GGAGGAGCCA GAGGGCAACA AGGGCTTTAG TGGGAAGGTA TTTGCACCTG TCATTCCTTC CTCCTTTACT 001440
001441 CCTGCTGCCC CTTGCTGGAT CCTGAGCCCC CAGGGTCCCC CGATCCACCT GCAGCTTTTG GCAAAGTCTA TGGTCCCACC 001520
001521 CTGTCCTCCT CCTACACATA CTCGGATGCT TCCTCCTCAA TCTTGGCACC CACCTCCTTC TTACTGGGCC CAGGAGCCTT 001600
001601 CAAAGCCCAG GAGTCTGGTC AAGGCAGCAG AGCGGGCCCC CTACAGCCCC TACCCCTGGG GATGTGGACC CAGGGATGCC 001680
001681 TTCCAAGGTG ACCTGTTTCC TCCCAATGGA TCCTTCCACC TTCTGGTGCA AGAGACCTGA AAGTGTGGGT GACCTGGAGC 001760
001761 TACCAGGCTC CTCAGTCATC AGGGTCCCTC CCAACACTAA GGCTTTCCTA GGCAGGAGCT GGGCTGAGCC ACCTGGGGGG 001840
001841 CAGAGCCTGA AGAGAAACTG ACTGGGCTTT TGGGGTCGGG GAAGAGGGAA CCCCACAGAC ATGGATCCCA CACTGGAGGA 001920
001921 CCCCACCACA CCCAAATGCA AGATGAGAAG ATGCTCCAGC TGCAGCCCAA AGCCCAACAC CCCCAAGTGT GCCATGTGTG 002000
002001 ATGGGGACAG CTTCCCCTTT GCCTGTACAG TTGGAGAAGC CAAGGACAGG CTCAGGGAAC TGGAGACCGA GTAGGCGCTG 002080
002081 TCCTCTTCAC TGCACGCGCC CTGGACCAGT GCCAGCCCTG ATCATGCAGC ATTTCCAGGC CCCCTTCTTC TTCCTGTCCA 002160
002161 CTAGGCCACA GCCGCCCTCC AGGCCCACTA TGTACACATC TTCCCCTCCA AGGTTTGTTC TGCCCCTGCC CTGACTCCCA 002240
002241 GCCCTGTGGG GGTCCTGACC ACACCTCACC TGGCTCAGAC TCTggcgcaa ccctggctgc cctgccactg cctctgcccC 002320
002321 AGAGTTGGGG CCTTGACAGC CTGGCTGGAA GGGGACACCC TAGCCTTGCC TCAACACCTG GGGGTCTCCA TAACTACCAC 002400
002401 AGGCAGGTAG
[back to top]

Predicted Small Protein

Name NONHSAT139762_smProtein_347:580
Length 78
Molecular weight 8578.764
Aromaticity 0.038961038961
Instability index 85.225974026
Isoelectric point 8.52301025391
Runs 8
Runs residual 0.0321852060982
Runs probability 0.0475181063416
Amino acid sequence MEEEPWAPQGSPCWTVRQRMTMMMLSSPSCLLTPSCLYHSDDVRPSSSVPCTRNRAHLLR
RMDAAPTNGTRTTSGVP
Secondary structure LLLLLLLLLLLLLLLHHHEEEEEEELLLLLLLLLLEEELLLLLLLLLLLLLLLLHHHHHH
HHLLLLLLLLLLLLLLL
PRMN -
PiMo -