NONHSAT075799
Revision as of 18:40, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075799 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
4505 nt |
Genomic location |
chr2+:179419288..179423693 |
Exon number |
1 |
Exons |
179419288..179423693 |
Genome context |
|
Sequence |
000001 TGGTTGTAAT GATGCACTCT TCCAAATGTT CAGACACCAT AGACCACACA ACGCGGCTTG TCTCACGCTT TTCCACAATG 000080
000081 TAGTGAGTGA TTTTTGCACC ACCATCATCA GCTGGAGGCC GCCAGAGAAG GGTGATCTTC TCAGCAGTTA CAGTCTTAAA 000160 000161 TTCAATTGGT CCACCAGGTG GGCCTGGTTT GTCTATCAGT GAAAGGACAA AACACGATGT TAGTACTTCT TTAAAGCCTA 000240 000241 CTTGTTCAAA ATTACTAAGC TTTAGGCAAA TGTAATATGA CAGTGGTCTG TATTCAGCAC CTACCAAGGA TCTGTACTCT 000320 000321 GATGGTGGCT GAGGCTGAGC CCATGGCATT CCTTAGTTTT AATTCATAGC ATCCACTATT AAGGCGATCG GCATCTTTGA 000400 000401 TGAGTATAGA TGCGAGGTCC GTGGTATTTT CAACACACAC CAGTGCATTG GTTTGTAATT CTTTATCATC TTTATACCAC 000480 000481 TCAATAGTAG GCGCAGGTTT GCCAGAAATG CCAGCTCTGA GCTTCACAGA TGTACCTGCT CTGTATTTGA CAACTTCTGT 000560 000561 ATATTCTAGA GGCAAATCAA TTACAGGACC ACCTGCAAGA AAAACAGATG AGAAATATTT AAAATATTAT AAGGATGGAA 000640 000641 AAAAAAATAG TTGCACCAAC CTTAAAGTAA GGTCATTGGC CATTATTAAA TTATACACAC ACACCATCAT TATAATTCTA 000720 000721 TGCAATTATT ATTTAAAAAT TAAAAATTTA TAGGCCACTC TTCTATCTCA GATGGGGTAG AAAGACTGTG AGTTGTGCAG 000800 000801 GGACTTAAGC ACCTTTTACA TGTGTTTTAA AGTCCATTAG TTGCTTTATT CCAGTGAAGA AATGGGATAT GGTAGTGAGA 000880 000881 ACATCATGGA AGAAGCTGTT AAAACATTTC CTTTCACTTT AGCTTTTCTT TCCTTTTCTT CTACGCACCT CCTATTCTTT 000960 000961 TTCTTTTCCC ATCCCAGTTC ACTGATATCC AAGTGTGGAT GGTTCATGTC AGACACTTAA AGTCTGAATT CTCTACCCAC 001040 001041 AGAGCTACAT AATTACTGGA CAGATTTTCT GCCATGCTGT TTGGAATTAT CAAGAAAGAT AACTAAATTC GACTTGCTTT 001120 001121 ATACTCTCAT AAACACTGAT TCAGTATCCA CAAAGCCTGA TTCATAAATA ATGAACAGCC CTGAGATTCT CAGCATGAAG 001200 001201 ATGGAAGTGG ATACTTTTGC CCAGACACTA CAGTGGCTCA ATTTTCTCTT AGCAAATGGA GATCTTTTAG GTAAAGTGTC 001280 001281 ACAGGATACC TGACTCTCAT GACGTTTTAA TTTTCAAAAC ATTGTTGAGT TGAATGTGCC ACTTATTTTC CAGAATGGTG 001360 001361 AAGAATACGC ATTTTGGACT AACCATGATA GAGAGGGCTC TGAAGTCTGT CTGTCTGAAT TCCCACTCCA TCCCTAACGG 001440 001441 GGAAGTTACA AAAGCACTCT CAGCCTCAGT TTCCCTTCTA TAAGATGGCT AATATGAGGG CTGTGAGAAC TAAGGGAAAG 001520 001521 AATTCATGAA AATTCCTCAA TAAATGTTAG CTGCTGCTAA TACTATCATC ATCAAAGTCT GTGTTTAGAC CAGGCATGGT 001600 001601 GGCTCACACC TGTAATCCCA ACACTTTGGG AGGCCGAGGT GGGTGGATCA CCTGAGGTCA GGAGGTTGAG ACCTGCCTGG 001680 001681 CCAACATGGT GAAACTCCGT CCCTACTAAA AATACAAAAA ATTAGCTGGG TGTGGTGGGG CATGCCTGTA ATCCCAGCTA 001760 001761 CTCAGGTGAC TGAGGCACGA GAATCGTTTG AGCCCAGGAG GCGGAAGTTG CAGTGAACCA AGACCGTGCC ACTGCACTAC 001840 001841 AGCCTGGGCG ACAGAGTGAG ACTCTGTCTC AAAACAAACA AACAAACAAA CAAACAAACA AAAAAAAACC AAAAAATGAA 001920 001921 GTCTCTGTTT AGTCTGTGGC TTATTTAAGA GCAATATTCT CTAGGAACTC AACCATGGTT TAATTATTGA CTCTGATAAT 002000 002001 TTAAAATAGA ATGAAAGCAC CAACTCATAC AATCAATCAT AAAAGGTTGA AGTTGGAAAG GCCCATAGAT ATCCTGAGGT 002080 002081 CTAAATCTCT CACTTTACAG TCAAGTCAAG AGGGCTGGAA AGGTATTTAA GGAATTTTCC TCAGACTCCC AGCTAGTCCA 002160 002161 TAATTTCTTC CAAAAACCCC ATGAAGGCAC AGAGTAAAAG TTATTCTATA GGATTAGAAC CAGGAAAAGG TATGCGGAAA 002240 002241 TACTGAGTTA AATAGCAATT TTGATTCAAA GTGCTAAGCA TGCTTACCAT AAGAATCGAT GCAAGTAATG GGCCCTACAA 002320 002321 CCTCAGATGG ATTGCTAATG GAACCAACAG CATTCCTAGC AAAGGCACGG AATTCATACT GGGAATTCTG AGTCAAGCCA 002400 002401 GAGATGGTGA ATTGAGTTTC AGTAACATTG GTGAAGCTGG CCTTGGTCCA TCTGCCATCT GGAAGGTCAC GTCTCTCAAC 002480 002481 AATGTAGCCT GTAATCTTGC TACCTCCATC GAAAGCTGGT TGTTGCCATG AAAGGCTGAC AGAGTTCTTT GAAATATCAG 002560 002561 TGATACGAAC ATTTCTTGGG GGTTCTGTGG TAATAAGAGA AGCAGATTAG CGGCACTTAT AATATTTTGC TTCGCAGAAG 002640 002641 TAAGATTTGC ATTTTTGTTA TCAGAACTGC CCTTCCCATG ACAAATACGT ACCACAAGCA TCAATTGCCA AGACTGGTTC 002720 002721 AGAAGGATGG CTAGGTTTTC CAACTCCAGC AGCATTTTCT GCATACACCC TGAATTCATA AATAAGTCCA GCACTGATTG 002800 002801 TTGTGACTTT GAAGTGAGTT GTGCGGATGA CCAGTTTGTT GGCTTTTTGC CATAAAATAC TGTTTCTGTC TTTCATTTCC 002880 002881 AGGTGATAGC CTACGACTGC ACTGCCTCCA TTTGACACTG GTTCATGCCA GCCCACAGTG ATGCTTTCTC GAGTAACATT 002960 002961 AGTGACCCAT GGTGTAGATG GTGGTCCAGG TGTTGCTACA AAAGAGAGAA ATCCTATAGA TTAGTACAGA CAATAACACA 003040 003041 TTTATGGTAA AAGAAAACCT GGATCTTTGA AAAGTTGGAC AACTTACTGT ATGGTAGTTT GACAGTCACA CAAGCTGAAT 003120 003121 CTATATGATC ACTGATGCCA AAGCGGTTTT CTGCCTTGAT GCGGAATTGG TATTCTTCTC CTGTGGTCAG TTTCATGACT 003200 003201 TTCATCATGG TTCTTGCAAC TGTTGCAGAC ACTTCAGTCC ACACTGCAGT ACTTGTTTCT CTTTTGAGTA GAATGTAGTT 003280 003281 GGTAACTTGA CTTCCACCGT CATACTTAGG TGGCTCCCAT TTGAGAGTCA CACTTTCTTC AGTTATATCA CTAATAACAA 003360 003361 CAGGGCCAGT TGGAGGACCA GGCCTGTCTA GCACAACAAT GTTAATGAAA GCTTTGGTTG TACCACTGGA GTTGGCAGCA 003440 003441 GTGATTTCAT ATCTCCCAGC GTCAGCTGTA ACACTTTCTT TGAGATTGAT GGTCAGGTTC TCAGCAGTAA TTTCGGTATT 003520 003521 AAATCTCATG GTTGCCTTAA GGGGGACACC ATCTCTTGAT AAGGTCACTT TGGGAAGTGG TTTTCCAGAG ATTGGAATGT 003600 003601 CAACTTTAAG GTTTGAACCA GCTCTAACAT ATACAGTGTG ACTTGGGAAA TTCTTCATAT CAATTTCAGG TGGTTCTGAA 003680 003681 AAATGAGTAT AGAAAGTGAA AGTGAAAAAG TGTTTCTGAA AATTAACATA AATCAATGCA AATAATTTCA AATTTTGCTT 003760 003761 CTACACAAAA TTAGACATAC CTAGTTGCTC CTTAATAAGA ACAGGAAGCA GAAGCTCTCT CGGGTCACTC AGGCCAGCTT 003840 003841 GATTTTCAGC AAACACTCGG AAAAAGTATT CAGAATTCTC TCTCAGACCG GAAACAACGT GATGGGTTGA CTTTGCCACT 003920 003921 GCACATTTAA CCCAGTTTTT CTGTCCTTTT TCTAGTGCTT CAACGACATA GTGTACAATT CTGCTTCCGC CATCATGTTC 004000 004001 AGGCTTCAGC CAGGTCAGGG AAACACTGTC TTTGGATATA CTTGTTACTC CAAGTTTTTC AGGTGGGCTT GGTTTTTCTA 004080 004081 AGAAAACAAA GCATCAAAAG AAAGTGAATA ATTATTACAG CACTTTTAAA TGCGCACTCT TCATGTATTG TCAAAAGAAA 004160 004161 ACTTTTAAAT GAAGGCCATA TTTTTATGTT GATTTTAGTC TTCCTTTTTA CATAACCCAT TTTGCTTCTG AACCAACCAA 004240 004241 GGCTCCCACA AGCTATGTCA TTACATGCTA TAGCATTCAA ATCCAAATTA AGGGTAAAAT GACCAGATTA AATGATAAAA 004320 004321 TTTACTCCAA ATTCACCATG GGGATAAAAA AGAGGAACAA GATGAACAAT CTTTTAAAAA ACTTTATATA CAATTTCTGT 004400 004401 ACACACACCC CCACCTCCTG CAATTAAACA GTAGCATCGC CAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 004480 004481 AAAAAGGAAA AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT075799_smProtein_2279:2530 |
Length | 84 |
Molecular weight | 8847.9526 |
Aromaticity | 0.0722891566265 |
Instability index | 41.3 |
Isoelectric point | 5.05218505859 |
Runs | 13 |
Runs residual | 0.0165997322624 |
Runs probability | 0.0425516013752 |
Amino acid sequence | MLTIRIDASNGPYNLRWIANGTNSIPSKGTEFILGILSQARDGELSFSNIGEAGLGPSAI WKVTSLNNVACNLATSIESWLLP |
Secondary structure | LEEEEEELLLLLLLLEELLLLLLLLLLLLHHHHHHHHHHLLLLLEEEELLLLLLLLLLEE EEEELLLHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |