NONHSAT120275
Revision as of 21:37, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...")
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT120275 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1585 nt |
Genomic location |
chr7+:42906250..42908895 |
Exon number |
2 |
Exons |
42906250..42907591,42908653..42908895 |
Genome context |
|
Sequence |
000001 GAATACTAAT ACCAAAGGAC TGAGTCTCTT TAAATTTGAC CAACTGACTT AGCAGGCAGC TGGTGCCTTG GTTCCTTTCT 000080
000081 ATCCCTCATG CTTAAGATAA CTTGACAAGA CACTGAGGGA TATTTTGAAC CTTTCAGGCC TAAAAGCTGT GATTTGGATG 000160 000161 GAATTAATAA AATGGCAAGG TAATTGCAAT CCTTTTCTCT CTTTATTGGC TTGTATTTTG CTATGTTGAT TCTGAAGTGG 000240 000241 ATAACTTGTT GTTCTATACT TTTTAACTTA AGAAAATGTG TTCAGTATGA TTTTGTGTCT TCCTTAATGA AAAGTGTTTA 000320 000321 TTTTCCATTG CTGGTTTGCC GCAGACCCAT TTCTGGCTAA GCATAGAACT CTTCAGTCAT CTAAACCACT GTCTGAACAT 000400 000401 ATTTGAGCAT GGAAAAGTAA AAGTTTTAGG AATTTATCTG TGTTGGGTTG ACTATTATGT ATTTCTGTTG ATCTCCAGAC 000480 000481 ATAGAAAGGA TCATTTTCCT TCCTAGGACA CATTCAAATA CAAATGCTGG TTTTATGGAA AGATAGTGTC TGGATTTAAT 000560 000561 GTATCAGATG CCTTAAGATA TGTGAATCTG GTAAATTCCA GGCCTGATTA TCTGATCATT TGTGTATTAA CATTTGGAGG 000640 000641 CCAACAGCAA TTCTCATAGA AGGGAATGGG AGAGCTTACA TAAACTGAAT CACTGTGATC TAGGCATGAT TTTTATGTGG 000720 000721 AAATAAATTT TTCCTAAGAT AACTTGAGTC TTTATCCCCT TTTTATTATT AATTGCCTTG ATTTAAAAAT GGGGCAAACT 000800 000801 CAACAGAAAG ATGAAAGCAA TCTTATATAG AGCCGCATTT CATTTGCCGT AGGTCTTGTT TTCCAGAGCT ATCTCCAACT 000880 000881 TTGCCACCTG AGAAACACAA GTCCAAGTCC AATACTTACA GAAGAAATAA CTATTCCACC TAGTCAAGGA ACTAGCCAAC 000960 000961 ACTTAATGGA GGATTGCCCT TGGTTATAGA GCTAACTGCA AATGAAGTAA CTAGAGGAAG ACCATTTACC TTCTCCATTG 001040 001041 AAGAGACCAT TCAAGAGCCA ACTCAGCAAT CAGGGTCTAG CAGTGTTACT GACTGGATGA CTGGCACTTA GAGTCCAGCA 001120 001121 CCCTGCTGAG AAACCAGCAA CCCATGTGAG GATTCCATGG CCAGTAAGCA TGCTCTGCTT CTTGACTTTA TGTAGAGGCT 001200 001201 GTTGGTTAAC TTTCCAGTGC AAATTTTGTT CATTTGGATT TCCCTATTTT GTCTGTTTTT CCTTTTCATT CATGCACATT 001280 001281 TTACAGTCCA CCACTCTGCT TGGCTCCTTa tatagtttgg atatttgtcc ctgcccaaat ccACTGAGAT CACAAGACTC 001360 001361 TTGAACAGAA GAAATGCCAA GAGAGCTAGA ATCTTACAGA TGGTGGTATT AATAATGGAG CAAACTAGAA CCAATGACAA 001440 001441 AGACATGAAG TCTGAAAATA GCACAGAGAA TATAAATATT GTGAGATGAA TGTTCCCCCT TCAATTCTCC TTATTTGCCA 001520 001521 AATATTTTCA TTTCCTTTTG TCATTATAGA AAATAAAACC ATGCATCACA GTCAAAAGTG CTCCA |
Predicted Small Protein
Name | NONHSAT120275_smProtein_1169:1363 |
Length | 65 |
Molecular weight | 7366.6899 |
Aromaticity | 0.1875 |
Instability index | 71.9828125 |
Isoelectric point | 7.51470947266 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0510510510511 |
Amino acid sequence | MLCFLTLCRGCWLTFQCKFCSFGFPYFVCFSFSFMHILQSTTLLGSLYSLDICPCPNPLR SQDS |
Secondary structure | LEEEEEELLLEEEEEEEEEELLLLLEEEEEEELHHHHHHHHHHHLLLEELLLLLLLLLLL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooooooooooo oooo |