NONHSAT099222
Revision as of 20:02, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099222 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2582 nt |
Genomic location |
chr4-:174071353..174074003 |
Exon number |
2 |
Exons |
174071353..174071358,174071424..174074003 |
Genome context |
|
Sequence |
000001 TTTCCCCTTT TATGAAATAC AAATATTTGC ACATCCACAA GATAAAGAGA AAGAACAAGA AAATAGAGGA ATGAGACACT 000080
000081 CTGTCTTTAG GCCCATAATA AATGTTCCGT TCGCCCCCAT GCCGGAGCCC CAACCTCTAC CTTACAGAGC TGCAGTGATC 000160 000161 ACATGTCCTG GCATGCCGTT CTCCCTCTCC AACAGTGTCT TCATATATTA TCTAAACAGC TGGTTTCATG TGTATATTAC 000240 000241 CCTACACAGC CTCATCTTTT ATGACGTTGG ATATAAGTTA TAAATAAAAG ATCGTGAATT TAGCCTGTTT TGACTGAGCT 000320 000321 CGTTGGACTT TAAATGGGAA TCATTGAGAC CTACAAATGT ACATTTCCAT TGTTTTGACG CCAAGGTATA ATGCCTGGAG 000400 000401 TTCATAAATA AAATTATATA AATGATTCTG TCTTGCATAA ACTGCCAGGG AGACAATAGG CGATGTGTCC CTCGGCCCCC 000480 000481 TTTGGTGAGC AGGCTGGAGG AATCACCAGG TTGGTGCATC CGAGCGAGGC AAAGAGGCAG ACCCAGCCAA CTACACTGCA 000560 000561 AGCAGTTCCA ACTGCACAGC CAGGGACAGG CTCCATGGAA AAGGCTGTTG TTCAACTGTT GGCCTTTTCA GCCCCATTGT 000640 000641 GCGGACAGCA GTTTTTCTCT AGGGTACCAA AGTGTCCCTC TTCAATTTAC AATAGTGTTT GTATTTCTTA GCTTCACAAA 000720 000721 CTGTGATATG AGCAAACTAA ATTATGCTAT TTAACTTGCT TTGTAGGGGA AGAAAGGGAC TAGAGTCAAA GCAAATGGCC 000800 000801 ACACCGTAGT AGTAATAGGA TTTAAACCCA TTTCTGCAGA CTCCCACTCT AGAGTTCCCT TTACTCTACT GAGCCTCCTA 000880 000881 TTTCAAGTTG AAGACATGAT TAGTTTGTTG GATTTCATTA ACTATAAATT GAACATGGGT GCTAGAGATA TGATGATAGA 000960 000961 CAAGATAGAA GAATTCTCTG CTTTCCACAA AGTTTATAGG TCCATAGGGA AGGCAGACAT TAAATTATAT GATGAATGCT 001040 001041 ATGATAAGAG ATATTTATGA TTCAGCACTG GATGCTGGAG GCACCTAGTG ATATCTAATC TACTCTAGTG GATCCAGAAA 001120 001121 GGCTTCCTGG AACAAGAGCC ATTCAAGAGG ACACTGGCAG ATGCACAGAT ATTACCCAAG CAAGGGGATA GAGTGGAAAG 001200 001201 GAGAATGTGC AGAATGCCTG AGATGAGTTA CAGTGATAGG AAGAAATCCG GATGGCTGGA GTGAGTATTC CAGGGTAGGC 001280 001281 AGTAGCTAAA CCCAGGGTTT TCGAGGCAAT CCTAAAGACA GTGGGCAGGG GAGAAAAACA GACTATCAGG TGACTATGTG 001360 001361 TGGAGAGCTA CAGAGAGCAC CAGGATTAGC TTAACACACC AGAATATACA GAGTTCAGTT TAGAGTCCCT TGCCTCATCC 001440 001441 TATCTGATAC TGTTAAGAAT GCACATATAT CTGTTTTCCT AAAAGTAGAC TGGGGAAAGA GAAGCCAGTG CTCTCTTACT 001520 001521 GGATGCTATT CTTCGATTTA TTTAATGTAT GTTTACTGAA TATCTGGTAT ATTCAAGGGC ATGTACCACA TTGTGCTAAG 001600 001601 CACTGTTGAA CATTCAACGT ACAAGTTAAT ATTTATTGAG TGCTTGCCTG TTACACACTT AGAGTTGTGG TGATTATAAA 001680 001681 TGAAGTTGTG GGCCTCGTTT ACAGTAATCT CGCTGAAAGT AGGACACAAC AAAATAAGCA ACTAGGCCTG TCTACAAACA 001760 001761 GGTATTATGC ACACTGCTTA ATGTTTTAAT AAACAACCAA GTTGATCTCA GGGTTATATC CAACAATAAG AGAATTTTTG 001840 001841 GTTTTTAATG TTATTTTTTA AAGACTTAGA ACTAATTTCG GTTTTATAGT ACAGGTACCA AATTAATTTT TGCTCAAAAA 001920 001921 TATAAGTGCA TATTATGTGC TAGGCGTTGT ACCAGTGATA CAAATTGAGG ACATTGTTCC TTGCCTCTGA GAAGCTTGCA 002000 002001 AACAAGTGGG AACTATAACA ATAAATATAT TACGGTGGGA TGTGCTATAA AAATGTTAGA AGATGTTAAA GTAATGTGGG 002080 002081 CAACTTTGTA AACCTGTTTA ATTTATTCCA TTCCATCATA CTGCAAAAAT GAGAATAATG CATTTCCTGC TTTTTTTTTT 002160 002161 TTTTTTTTTT TTTTTTTGAG ACAGAGTTCC GCTCTTGTTG CCCAGGCTGG AGTGCTATGG TGCGATGTTG GCTCACTGCA 002240 002241 ACCTCTGCCT CCTGGGTTCA AGCGATTCTC CTGCCTCAGC CTCCTGAGTC GCTGGGATTA CGGGCGCCCA CCACCATGCC 002320 002321 CAGCTAATTT TTGTTATTTT TAGTAGAGAC GGGGTTTCGC CATGTTGGCT AGCCTGGACT CGAACTCCTG ACCTCAGGTG 002400 002401 ATCCACCTGC CTTGGCCTCC CAAAGTGCTG GGATTACAGG TGTGAGCCAC TGCACCCAGC CCATTTCCTG CATTTTTATT 002480 002481 GACACAATTT TAAATAAAAT GCTTGAAATC CAACACATTT CTGTTTTCTT CTGAAATGTT CTAAATAGAA CATTTATTTG 002560 002561 TCTAATAAAG TTATAAAATT GC |
Predicted Small Protein
Name | NONHSAT099222_smProtein_2216:2326 |
Length | 37 |
Molecular weight | 3910.5851 |
Aromaticity | 0.0555555555556 |
Instability index | 82.5527777778 |
Isoelectric point | 8.00030517578 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.024960254372 |
Amino acid sequence | MVRCWLTATSASWVQAILLPQPPESLGLRAPTTMPS |
Secondary structure | LEEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |