NONHSAT077221
Revision as of 18:46, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077221 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2346 nt |
Genomic location |
chr2-:228573101..228575446 |
Exon number |
1 |
Exons |
228573101..228575446 |
Genome context |
|
Sequence |
000001 CATAATGACC CTCTTTGATA ACGTGTTTAT GCTAATAAGA TAGCTTGGAG TGGGGTCCAT AGATAGTCTA AAAACTGGGG 000080
000081 GGGAAGGAGC TGAAGATCAT GCTCTGTAAG ATTCGTTTTT CTTTTTTTTA ATATTTAAAG AGATGGGGTC TCTATGTTGC 000160 000161 CCAGGCGGGT CTTGAACTGG CTAATTTTTA TATTTTTAGT ACAGACCGAG TTTTGCCATG TTGGCCAGGC TGGTCTCGAA 000240 000241 CTCCTAACTT CAGGTGATCC ACCCGTCTCG GCCTCCCAAA GTGCTGGGAT TACAGGTGTA AGCCACCGCA CCCAGCCTTA 000320 000321 TTTTGTATTT TTGTAGAGAT GGAGTCTGGC AAACATATAA TTACCAATTT ATTGCTCTTC TGTTTGAAAG AAGTGTTTTG 000400 000401 ACTGCAGTAA AGTTCTAGCC TATTGTGAAA ATCAGGCTAG CCCATTTCTC AGATGGCTGC CTGGCTAGAC ACCCTCTCTG 000480 000481 AGATGGCTGG AATGATTAGT AGAAAGGAGT GGGCAGGAAG TAGGTGGAGA GTGGGGATTC TAGATCAGGG GTCCTATGGC 000560 000561 CTGTTAAGAA CGGGCCATTA CAGCAGGAGG TGAGTGGCGG GCAAGCAAGC ATTACCACCT GAGCTCCGTC TCCCGTCAGA 000640 000641 TCAGTGGCGG CATTAGATTC TCCTGGAAGT GCAAATCCTA CTGTGAACTG TGCATGCAAG GGATCTAGGT TACGAGCTCC 000720 000721 TTGTGAGAAT CTAATGCCTG ATGATCTGAG ATGGAACAGT TTCATCCCAA AACCATTCCC CCTAACTCCT CCCCCATTTT 000800 000801 TTCATGGAAA AATTGTCTTC CATGAAACGG GTTCCTGGTG CCAGGAAGGT TGGGTACCAC TATTGTAGAT AATTTCCTTC 000880 000881 CAAATTACTG GCATCTGGGT TAATTCTGGC AGTATTGTCA GTACAACATG GACGAGGACT TGATAAAGTG ATTTCTTTCC 000960 000961 ACCCACCCAA TATCTTGTTC TTCTCCAGGC AGTCAGTTGT GGGAAACTTA TCAGGTTTGA GGGAGTTACT TGCTTTCATC 001040 001041 AGGTCACCTT GTCCCCTACC TCAGGGAGCC CCACAGCTCT GAGTGCTTTG GCTGTGGGAG AATTCCATCC TCTGGGTGTG 001120 001121 CAAGTGGGTG TGTATGGGTG GAGGAATCTG ACCAAATAAG GCTTTACCTT AGCTAGAAAA TCACCCTGGC TTCAGGAAAC 001200 001201 CCACCAGTGC ATGCCAGCTT TGCAGTTCTT TTGTTGTTGT TGTTTTTGGG ACAGAGTCTC GCTCTGTCAC CCAGGCTGGA 001280 001281 GTGCATTTGC TCAATCTTGG CATTTGCAAC CTCCACTTCC CAGGTACAAG TGATTCTCGT GCCTCAGTCT GCCAAGTAGC 001360 001361 TGGAATTACA GGTGCCCGCC ACCATGCCTG GCTAATTTTT GCATTTTTTA GTTTGAGACG GGGTTTCACC AATGTTGGCC 001440 001441 AGGCTGATCT TGAACTCCTG ACCTCAAGTC ATCCACCCGC CTCAGCCTCC CAAAGTGCTG GGATTACAGG CATGAGGCAC 001520 001521 AGTGCCCGGC CTCAGTTTCT GCAGTTCTTG CTTTTTAACA GTTGTTTACC CTACAAAAAT GGAAAATATA CTTGGAAATA 001600 001601 TTTGTGGACA TAGGGCTTTT AAGTATATGC ACTTAGAGAT AGATACAGAC AACCTATGGA TTAGGAAATA GGACACTATC 001680 001681 CATGTCTGAA ATTTAAATAA GGTCCAAATT AGCTTAGATC CAATATGATT CCCCAATGCA TATATGAACA ATACGTGAAC 001760 001761 ATTGTTGTGT GCACAACTAT GGAAAGGTCT TAATCCGCAC AGTGACTCTG AGATAAGACT CACTGAAGGA AATACAGCAG 001840 001841 CAAACCCAGG AGATGTGAGT TCCAATCTTC ATTTGTAACT CACTCCAAAT GAGATCCTAG CAATGAAGTA ATTTTTTTTT 001920 001921 GTTTCCCACT AAAAACAAAT AAACAAAAAC CTTAGTTTTT CTATGCTACA GAATTAGGAT GACAAATGAA CTTATCTTGC 002000 002001 AGTCACTATA AGAACACTGA CAGTTTCAGA GATAGTATTA AAAATCAACT AAACACTTAT AATTATTGTG AAAGCATTTA 002080 002081 TCTATCAAAG AAGGTTAGCC TGCAGCCAGT TGGAAAGTTT TTTTTGTTGT TTTTTTGGTT TGTTTGTTTG TTTGTTTGTT 002160 002161 TGTTTGTTTG ATAGAGACAG GGTCTCACTA TGTTGCCAGG CTCTCCTGGG CTCAAGCAAT CCTCCCGCCT CAGCCTCCCA 002240 002241 AAATGCTGGG ATTACAGGCA TGAGCCACCG TGTCCGGCTG CCAGGTGGAA AGAACAATTT AAGGAGATGG TTAAAAGTGG 002320 002321 AAAAGCCAAT AACATGGTAA TAATTG |
Predicted Small Protein
Name | NONHSAT077221_smProtein_1985:2170 |
Length | 62 |
Molecular weight | 7291.4691 |
Aromaticity | 0.213114754098 |
Instability index | 40.2426229508 |
Isoelectric point | 8.78057861328 |
Runs | 8 |
Runs residual | 0.0216694931223 |
Runs probability | 0.0569356120828 |
Amino acid sequence | MNLSCSHYKNTDSFRDSIKNQLNTYNYCESIYLSKKVSLQPVGKFFLLFFWFVCLFVCLF V |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHHLLLLEEEEEEEEEEEEEELLLHHHHHHHHHHHHEEEEE L |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH H |
PiMo | i??????????????????????????????????????????????????????????? ? |