NONHSAT100548
Revision as of 20:08, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100548 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1497 nt |
Genomic location |
chr5-:14663208..14664704 |
Exon number |
1 |
Exons |
14663208..14664704 |
Genome context |
|
Sequence |
000001 CGGGCTGAGT CGCCGGGGCC TGGAGGGGGA ACCGCGCGCT GCGGCTGCTG CGCTTGCTCC GTCCCCGGAC GCCGCTGGCT 000080
000081 TGCTTCCCTT GTCAGCTGTG TGGGGACTGG CAGAGGGTGT GAGAGCGGGA AACGACCGGA CGAGCGGCGG GGAGCGTCCT 000160 000161 GGGTGAGGAG GAGGAAGTCT GGTCTTAGGT GTGAAGGATG CTGACGCGTT CCGGCGCGTC GCGGTGCCAC TCTCGGCTTC 000240 000241 TGAGCGTTGC CCTACGCCGC AGCGGGTTTT CCTCAGCTGT GAAGCGCGGC TGCGTCCTGC CCGGGCTTCC CCCCGCCGGG 000320 000321 ACGGTTCCAA CGCCCGAGCC CAGCGGGCTT GGGCCTCCGC TGTCGGGCCA GGCTAGTTGC TCCGGGGCTG GGAGTTACGG 000400 000401 CACCGGGGTT GGGGCGGAGA AGACGAACTA GTTCAACTCG ACCCGGTTAA GCAAGCGCAG CAGTGTGTGT TCTTGGATCA 000480 000481 TAGTATTTCA TGTAAACATT TTGATTTAAG AGAAACAAAA GGGAAAATAT TAACCGTTTT CAAGCATCCA AAGGCGAAAT 000560 000561 GCTTCATCTC TGGGATGGAG TAGAGGAGTA GCCTCTGCGG TTGAGTTGCA GTCGTGGGTG CAAGAAGCAG CGCTGAAGCA 000640 000641 GAGTGCAGCC CCGGAATAGG GCGGGATGGA ATGGCCTGGG CAGTTCAGAA ACCCGCGAGG AGTCCAGGGC GGAACAGGTA 000720 000721 GGGAGCAGGG GATTGTATTG AAAGATGAAA CTGAAAGAGG GGTAGTGGAG ACCAGATCAT GAAAAGCCAT ATTAGGCTAA 000800 000801 CTGTGGCGCT TATGCTTAAT CCTCATTGAC AGATCTTGAG ATCATTTTGA AAAATCACTT TGTCTTCAGT TTGGTAAAAG 000880 000881 TTTGGAGAAG GGCAGGACTT GGAAGACCAG CTTAGGGAGA CTAAATAGTA GTGACCTCCA AGGGAGAAAC TGGACAGAAA 000960 000961 GAATATTTAT ATTTAGTGCC ACAGAACTCC GGGGGTATTG TTTTCTCCTT TAATTTTACT TGAAAAAGTA ATAAATGCAC 001040 001041 ATACTAAAAA ATTCAGAGTG TACAAAAGAA TATACAAAGA CTATTAAGGT GTGGGATTGA GGAGGGTTGA ACAGGATCCC 001120 001121 CCAAAATTCA CGTCCACCTA GACCCTCACG ATATTAACTT ACTTGGAAAT AGGGTTTTTG CAGATGTAAT TGGTTAAGAT 001200 001201 GAGGTCATAC TGGTATAGAA TGAGCCCTAA ATCGAATGGT TGGCGCCCTT AGAAGGGGAC ACATAGATAA ATGTGCACAG 001280 001281 AGGGAAGAAG GCCATTTGGA GATAGAAGCA GGGATTGGAG TGATGCAACT GGAAGCCAAG AAACGCCGCA GAATGCCAGG 001360 001361 AGCCAGCAGA AGCTAAGAAA AGGCAAAGAA GGATTATTCC AAAGTGCCTT CCGAAGAAGG TTGGCCCTGC CAAAAACCTG 001440 001441 ATTTCAGACT TCTAGCCCCC AAAACTGCAA GAGAATAAAT TTTGTTGTTT CAAGACA |
Predicted Small Protein
Name | NONHSAT100548_smProtein_197:430 |
Length | 78 |
Molecular weight | 7567.5416 |
Aromaticity | 0.025974025974 |
Instability index | 60.4675324675 |
Isoelectric point | 10.313293457 |
Runs | 9 |
Runs residual | 0.0191981931112 |
Runs probability | 0.0290682839702 |
Amino acid sequence | MLTRSGASRCHSRLLSVALRRSGFSSAVKRGCVLPGLPPAGTVPTPEPSGLGPPLSGQAS CSGAGSYGTGVGAEKTN |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLEEE ELLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |