NONHSAT125333
Revision as of 22:00, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125333 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2514 nt |
Genomic location |
chr8+:17952180..17955147 |
Exon number |
2 |
Exons |
17952180..17952246,17952701..17955147 |
Genome context |
|
Sequence |
000001 tggtgaaacc ctgtctctaa aattacaaac attttgtctc taaaaataca aaaattagct gggcatgaaa aaagagaaaa 000080
000081 cataaatggc taattaacaa ataaaattgt gtttcacctc taaaaataaa aataaaacat aaaaagtctt caccaaacag 000160 000161 ttggcatctt ttgctcttct tccttctacc agaggagaac acagtaagaa ggctgcacca gaggctgtgg tcttgatctt 000240 000241 ggacttaacc tccaaaactg agaaaataaa tatctgttct ttataaatca cccaatctca ggtactgtta tagcagcaca 000320 000321 aatggactaa gacaGtgact cccaaattta tgtcactagc tcagacctgt cccctgaatt tagattctta tatgtagttg 000400 000401 cttctcagcc tcatctactt tggataccta ataggcatct taatatgtca tgtctaaaaa ggaacttatg ttttctccgt 000480 000481 cccaatatac actgtccctt tcccaaatct tccccatctc agtaaatggc aatcccatct ttctagtttg cttaggccaa 000560 000561 agaatcttac agtcaatttg atttttctct ttcttaccac aaactcaatg caccagcaaa tcctattagc tttacgttca 000640 000641 aaatatacga taccccgaat ctgaccactt ctcaccactt tccacttctg ctttcttcca ggttactctc atctggatta 000720 000721 ttgtagtcac cttgtcactg gtatctctgc tttctcctaa cccccatcta atctccaaaa aatcagagca tgtcactcct 000800 000801 ggcccccaaa tccccccagt gactccgccc tccccaccct gctcagaatt aaagtcaatg atcttttttt tttttttttt 000880 000881 tgagatggat tcttgtgctg tcacccaggc tggagtgcag taagtagtgt gatctcagct cactgcagcc tccgcctccc 000960 000961 agattcaagc gattctcctg ccttagcctc ctgagtagtt gggattacag gtgcgcacaa tgcctggcta atttttatat 001040 001041 tgttaataga gttggggttt caccatgttg gccaagctgg tcttgaactc ctgacctcag gtgatccacc caccttggcc 001120 001121 tcgcaaagta ctgggattac aggcatgagc caccatgccc agcctaaagt caattatctc accacagacc acaaggctac 001200 001201 tttgatccaa ccagcccatc ttatatacta ccactttcct gttttctcac agtgctccaa tcacactggc cttctttctg 001280 001281 gacttcaaac atgccaaata tactctcctt gagggacata gcacttactg ctacctttgt ttggaatgtt ctttcccaga 001360 001361 tacccatgtg gcacacccaa atgcttgagt ggccccttat tagtgaggcc ttcctatagc attatatata agatggatat 001440 001441 aaggtaggac tcagaacata ctccctatcc tccttactct acttcacctg actccaaaca ctgtcaccac ctgacgtagt 001520 001521 acatatttta ttttttattt gtttagcatc tgtctgcctc taactagaat gcaagctcca tgaggacaga gatttttgtt 001600 001601 ttgtttaccg ccatattgtc agcagctaga gcaatgtctg gcatgtagta gcactcaatg aatattaatt gaataaatga 001680 001681 GCTACCTAAA AAATAACTGC ATTGATATCA TAACCCAAGT AGTGTCTGAA ATAATGTAAT GAATTACCAG AATGCAAATG 001760 001761 AATTATTTTC CAGATGTCTT TAAGTTGGGT GTTGGAAAGT CAATATGCAT TTTTCCTACA AAtataaagt aagtgctgtt 001840 001841 attatcccca tcttatggat aagacatctg aTATTTAGCT TATGCAACTA TGCCTGTTTT CTGATTTTGA GGCATGTACC 001920 001921 TCACCACTTA TACTAAATTT CCAGGTCAGA TCATAAAACC TTACGTAAGC CATAAAATTC AGATATAAAG TAGTCTAAAA 002000 002001 AAAGGAAGGA CCAGAATGGA AGATACCTAT CTTACACACA AACAGCTGTA TCTAGAGTAT AGGCTTCTTA GCTTTCTAGA 002080 002081 TGTTTCACCC AGTTATAGCT GTTCTTTGAT AGTGATACAG tgatagaggc aggaggcaga gaaattctag gcagatggga 002160 002161 agatccctgg caaagcacca ccctaaagct gaaaagcttg aaaccactgc ctaaagtgag aacttatatt cccgttttcc 002240 002241 tgcttgaatg ttgtcttttc ctaaactacc catagcctgc cccaccctat cttgtgccta taaagacccc agactcagcc 002320 002321 agcagagggg agaaacagct ggacatcaga gagaagcagc cggacttcag agggacagct tgatgacata actttggaga 002400 002401 agaatgcagc cagagatggg tggactccag ggaaagatta cctgccgccc caccctcttt tcagctcccc ttcctgctga 002480 002481 gagccacttt catcggcaat aaaatacact gcat |
Predicted Small Protein
Name | NONHSAT125333_smProtein_449:580 |
Length | 44 |
Molecular weight | 4829.6999 |
Aromaticity | 0.093023255814 |
Instability index | 65.011627907 |
Isoelectric point | 9.18621826172 |
Runs | 11 |
Runs residual | 0.0985105827019 |
Runs probability | 0.0357951534423 |
Amino acid sequence | MSKKELMFSPSQYTLSLSQIFPISVNGNPIFLVCLGQRILQSI |
Secondary structure | LLLEEEEELLLLEEELLLLEEEEEELLLLEEEEELLHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo |