ENST00000577267.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000577267.1

Source

Gencode19

Same with

lnc-VEZF1-1:3,NONHSAT054915

Classification

intergenic

Length

4056 nt

Genomic location

chr17-:56066403..56070840

Exon number

2

Exons

56066403..56066627,56067010..56070840

Genome context

Sequence
000001 TTAATAACCA GCGCAGCAGG CCCCTTCACC TGCTTTTATG CCTGGACCAG ATGACTGAAT GTAGAACTTT AGGCACTTTT 000080
000081 TTTTTTTTTT GAGACGGAGT CTCGGTTTGT TGCCCAGGCT GGAGTGCAGT GGCGCAATCT CGGCTCACTG CAAGCTCTGC 000160
000161 CCCCCGGGTT CACGCCATTC TCTTGCCTCA GCCTCCCAAG TAGCTGGGAC TACAGACTCC CACCACCATG CCCGGCTAAT 000240
000241 TTTTATATTT TTTAGTAGAG ACAGGGTTTC ACCGTGTTAG CCAGGATGGT CTCAATCTCC TGACCTGGTG ATCCACCTGC 000320
000321 CTTGGCCTCC CAAAGTGCTG GGATTACAGG TGTGAGCCAC CAGATCGGCC CTTTAGGCAC TTTCTACTTC TCAAGGTCAA 000400
000401 GAAACATCCT TTAAAAAGTT AATTCCCTTT TCTGGAGCCT AAGCCAGATC TTATCTAGGC CTTGTGTTGC CATCTGTTAG 000480
000481 CATTGATTTC TGGAATGGAG CAGCTTTCTC AAAGTTTGGT CTTGCTAGTC ATGAGGTCAT GTCAGTGTCT TAGGTCACTG 000560
000561 CTGCTCACCT TCCTTACCCA GGGAGTATAC TGCATAGGTT TCTGAACACC TGTTTTCATT ATTCACTGTT CCTCTCACTG 000640
000641 CCAAGAATGG AGGGACCCTC AGTTGAAGAT CAAATTGACT CTGAAGAAAA ACTGGAGATG TTTCTCTTGG AGTTTGGATA 000720
000721 GAGTATTCAC TTGATAACAT GTTTTTCCCC TGCCTTGCTC TTCACAAGAA CATCTGGCCA GGCATTAACA ATTAGTAAAT 000800
000801 TTTTTTGCAT ATGAACAGTA TTTTTCTGGT CATGTAGATG GGTGCACATG ACACTAAACA GCATTGTTTA GTGTTATCCC 000880
000881 TCTTAACTGG TGGGTTGTAT TTGGGGTGGA GGCTGTAGCC GAGGAGAAGA CATTCACCTC TGTACTCGAG AAACTTTGTG 000960
000961 TAGGAATTTA GTTTATTTTT TTATTTTTTT TAATTTTTTA TTTTTTACTA CTTTTACTGT TAGCACAATG CTATAATTGA 001040
001041 GCTAATCTTT GTAGTTTGGT GCAGGACCAC CAAGTTTGTG TGACCCATTA CCTACTTTTT CCATGCTCAG CCATTACCCT 001120
001121 GTCCTGGGGC ATCTGAGGGC AGTAAGGAAC AGGTGTCCAA AGGAGGAATG TTGGTGCCTA TGAGTATGTT TTCCAGTTGT 001200
001201 ATTGAATTTC TTACTTGGTG TATTTTTGAC TTGTCTTAGT TTCTTTCCTT GTGGTCTATG CTATTTTACT TGCGATTTGT 001280
001281 TGGATATTCT CCCTGTCATT AAAGAGTTGT AAAATGGAAG TTAGTTTCTC TATGCAAATG CTTTAATGGA TGAAGCTGAT 001360
001361 AGGTTTAGCA TTGATTTTTG CTGGTGTCCT TCAACAAGCA TGAAGGTGAT AAATGTGTTT CCATGGCTTT AGACTCATTT 001440
001441 TTGAAGTCTT GGATTGTGTG AACATTCTTA GAAACAATAA AATGTTTTAA TTAAAAGCCC TCGACTACCA GCTGAATTCA 001520
001521 GTGTCTACTA GGAAAATGGG TAGATTTGTT ACATTGTCCC TTTGCTCTCT ATGACTTTGT TCCAGTTGTC AAGGAACTTA 001600
001601 AATGGGTATT CAGGAAAAAG AATTCTTGTT TCCCTTTCCT CACCTTGCCA GTTAAATAAC TCCTGGTGAC ACTTCAGGTG 001680
001681 GTAGAATTGA AACACAAACC TGACTTCTGA CCACATGGGT CAAAGGCAAA AGGCAAATGG CTTCAAAGCC CTTAGTGTGC 001760
001761 TTATCCAGTT CAGGCAGTGA GGAGATAACC TCTGCTTTCC TCCCTGAGGA GTTTGGAGTA TTTAAGGGGG GATGGGGGGG 001840
001841 GTGTCACTTT GAAAATATGT TGCTTTTTCT CCTGATTGTA TTGAGGCTGA TATGGAAGGG TTATTTCTTT CTGGCCAATA 001920
001921 CTTTTTGGTA TTTCTAAATA TTGCAATCTT GATTTTTACT ATTAAATTTG TTAATTGTCA GTTCTGGCTT TTTTGCATAA 002000
002001 AGAGTTGGTC CATTAACTTG CCAATTTGAA GCTTCTAACT AGATATTCCC TACTGAAAGT TTTGGATTTG TTTTTAGTTT 002080
002081 GTGGAGCAGT CTTAGCTGGG GACAGGTAAT TGACAACGGC AGAGATACTT TCTTTTCCTA GGATTCTAAG TCTGTAATCC 002160
002161 ACATCCTCAA TGTATTCACA GGACTTTAAA ATTCTCTCCA AATGAGGAAG GAAATATCCT GTTGCTTTCT AATGTTTACT 002240
002241 AAAAGTTGTG TTTAGAACAA CAGATTTTAA TAGGCATCTT CCTTTGTTAT GTGTCATTAG CCCTTTGCCC GTTTACCTTA 002320
002321 GGGCTCTTTG AAGGAGAAAT GGATGGGAGA AAACCTGTCA CTTGGCGAAA GTAAAAGGGA TAATTAACTG GCTCAGAGCT 002400
002401 TATGTGCAGA GTTCCAAGCC CCAAAGTTAA TCTAGAACCA CTCGATAACA CCAATAAAAA TATTTATTTC ACATCTGTTA 002480
002481 TATATCTGGA AAATGTTCTA AGCATCTTAC ACATATTTCT CATTAAATCC ACAGGTGACC ATTGTGAGGT AGATATTTTG 002560
002561 TTCTAATTTT CCAGATGAGG AAGCTGAGAC CCTAAAAGGT TAGGTGACAG GTTATACAAC TTGGAGTGTG GGAGGAGGAG 002640
002641 AGAGGAACCT GAACAGGGCA AGTTGGGGAT CTGACTTTTG TTTGGGTAGA TGTAGGCACA TTGTATTTTT GGCTTAGATG 002720
002721 CTTTATTCAT CATGGCTGAA GGTAATACCA TTTACTCACT CACCGAAAAT TGTTTACAAT AATCTAGATG AATTTGCTGT 002800
002801 CTTTGGACAT CTGTCTTTTG ACTGGACCCC AGTATATAGT CTGTGGAAGC TCACTTAAGG AGAGAGCTCC TTTTTGTTTG 002880
002881 GTTAGAGAAA TTTTCTGTCC TAAAAGTAGA AATAGCCCCT TCTAGGTAAG GATGGAGCAT TTGATCATAC TGGTTTCATT 002960
002961 ATATTCCTCT AACAGTTGGA ACCGATTGTT TTTGAGTACT TGTTTCAAAC TTCTGAGTAT TTTCCTTCTG GAAAATAGCT 003040
003041 CAGTGTTTAA AATTTACATG AACTTAAAAG GTTAATTTTT TTTTAAAGAA TGTTTGAGGA GCAATCAATT CTGATTTTGT 003120
003121 CTTATGGATA GAAATAGAAT TAGCCATTTT CCTCAAGAAA AGTGATTCTT CTGAATCTTA GCTTTTCAGT AATGAGAACT 003200
003201 GGACTGTTTC CACTTGACCT CTATTTCCTG TTAGTGGGAA ACCGCTTCCC AGAGGTGCTG TGTGAAAGAT TGCTGGGGAA 003280
003281 AGGGTTTCTA GATCCCAGCA TAACAAGTTC AAGAGTCCAG CGATATTGTC ATTAGAATAA TGGTCTTCAT TAAGTACTAG 003360
003361 TTTTCATAAT CCTGAAGCTT CATTTTCACC AATTTGAAAG GCAGCTAGGG AGGAGAAGAC TATGCAGGGA AGGAGGAAAA 003440
003441 CTCTGGAGTG CATCACAGAG ACCTTGAGTG AGTTAAGGCA GGGAAGAAGC AGATTTGCTA TCCACTGAAT GAAAATAAGA 003520
003521 AGAATTCCAT TGTCCAAGGT CAGAGCAAGA ACACAAAGGT TTTAGTTTAC TTAGTTAATT CCTTAGGTTT GGACATTACA 003600
003601 GGAGACATGG GGGTGACCAT AGCAATTTAG CTGATAAATG TATCAGAAAC TCTTTCATCA TTTTCTGTCC CCTCCTATCT 003680
003681 TAGGCTGACC GGTTCCCTGA TGTGTTACCT GCTTCTGCTA CTGATCCAAA CTGCAGAACT TCTCATTCAT CCCCAAGGCC 003760
003761 TCCAGGCAGT ATCCAATGGG GAATCAGCTC TAAAAGGAAC CAGACCAACG TTTTCCAGCC CCTTCATTCT GCTTCCCTCT 003840
003841 GTGTGAGGAA AGGATAGAAA TGTTCAGGAC ATCATCATAC AGGCTCCTCA TCTACAAAGT TCCAGTAGCA GTGACGCCTA 003920
003921 CACGGAAGAC TTGGAACTGC AAACAGGCTG GGGTCACCTC AGTGACATCT GACGCTGTCC AACCAGAAGT TCGATTTTTG 004000
004001 TTCTGGGGGT GAAGGAGGAA ACAGACTGTA CTAAAGGACT AAAATAATTT GTCTAT
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Predicted Small Protein

Name ENST00000577267.1_smProtein_1736:1936
Length 67
Molecular weight 7547.7871
Aromaticity 0.212121212121
Instability index 44.0818181818
Isoelectric point 5.60455322266
Runs 10
Runs residual 0.000907276356379
Runs probability 0.0593976329271
Amino acid sequence MASKPLVCLSSSGSEEITSAFLPEEFGVFKGGWGGCHFENMLLFLLIVLRLIWKGYFFLA
NTFWYF
Secondary structure LLLLLEEEELLLLLHHHHHHLLLLLLLEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHH
HHEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
HLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTT
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