NONHSAT011397
Revision as of 15:42, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...")
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT011397 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4174 nt |
Genomic location |
chr10+:11047259..11378670 |
Exon number |
2 |
Exons |
11047259..11047403,11374642..11378670 |
Genome context |
|
Sequence |
000001 gaggagagGG CGCGTTAGTG AGCAGCGACT GTGGCATTGA TGTTTGAGCA TACTTCTGAA CTGGCTTTTG TTGAGACTAT 000080
000081 CAGTATAGAA GCATGCGCTG TCCCAAATCC GCTGTTACTA TGAGAAATGA AGAGCTGCTT TTAAGCTTCT TGGCCTCAGC 000160 000161 TCCCCTTCCC CGCTCAGCAC CCTGTTAGGA TCAGTGTGTG TGGATGGGAT AGCCCTGGGA TGGAAAGGAC TAGCCTCTAC 000240 000241 TGATGCAAAA AAACAAAAAG CAACACAAAC GTTTCCTTCT TATAGCACAT GCACTTCCTT ACAATGACAT GATTTGTATT 000320 000321 ATCCTCACAT GTGTTTACTA CTGCTGGGGC CTTCCTTCAT CCTCTGAGGG CTATTTTGTA CTTTCTGCAG CAATCAGCTT 000400 000401 AATAACAACA CTTATTGCAC CTGTCTCTCT CTGAGAACAC GGTGTGTCTC GACACGTACC ACGTACGTGG AAACACAAGA 000480 000481 GCCCACCACT TGAATTTCTA AGACCATTTC ATTCTGAAAC TTCTTATCAA TTACCTAAAT CTCAACGAAA AACAATTTAC 000560 000561 TGAAGCCGAC TCCCCTCCCC ATCTCCCTCT CAACCTCAAC CCACCTGCAT GCATCTCCCC CAGAGGAAAC ACTGAGGGTA 000640 000641 GGGGACAGGA GGCTCAGGAC GCGCCCTCTG AATCGAGTGT TTCTTCTTCA CAAGTCACCA AGAGAGGACA TGAGGGGGAA 000720 000721 AGTCCTTTTT GCCCTTCTCC AAAAAATAAC CTTCCACAGA GACAAACTGT CCTTCTATCC ACTTTTATCT TTTAATAAAT 000800 000801 ATCAAAAGGA AAAAGCTGCA AGGGTGCAAA GGGCCTGTGC CAGAAGAAAA CACACACAGG GAAACCGCTT TTTTTAATCA 000880 000881 ATTGTAGAGA ATAGTCATTT TTAATCTAAA TTAGAGAATT GTGATACAAT GGCAGTCCTC AAAGGCGTAA CGAGTTCATC 000960 000961 TTTCTTTCAC CATAGGGGTT ATAGTTGGCT TGTGCTACTC TGGAATCATT TTACTGTTTG TTTTTATTAT CTTAAGTGCt 001040 001041 aattaaaaaa aaaataaaat tttaaaaaaa CCTGTAGTTT CATTACCTTT TTGAATAATG TCATACAAAA AATGTATTTG 001120 001121 TTTTTTTGTG CTGTGAGAAT TGATGTTTGT AGATTAATAA TCATTTTGTT TAGAATTACA AAATAGTTTT TAAATATTGT 001200 001201 CTGAGAAAAG CCAAAGTTAA TGCAACCTAG TGGAAACTGT AAGACCATTT GAGTATTGTT TGTTTTATTG ATGCATTTGG 001280 001281 ATTTTGTTGT TTGATGGAAT TTGAGCCAAA AAAAAAATAC GCAGGCTTTC CTATTTCTAC AACTGATTGT ACTTATGCAT 001360 001361 TTTGTACCAG TGGAACTTTT TATACTGGAG ATTAAAAAAA AAATGGAAAT TTTTGTGGCT TGCTCTGGTG GGCCCCTGAC 001440 001441 AATGACTGAT TTCAAGTTTG ATTTCGGGtt gattgattga ttgattgatA GAAAGAAAGT TGCTTTTCTT TTGAGAATTA 001520 001521 AAAACTTTGG CTTGATTTCT TTTTTCCCTT TGCTTATATC TAGCATTAGA ATTTTGTCTT AAAATAACAG CGGTAAGTTT 001600 001601 CACTTTTTAT TCTGTATTGT GCAGTTACAC AATAAGGTAA TTAGATTTAG AAGTACTCAG TCACTTTAAG TGGATAAATG 001680 001681 TATTAGTTAA AACTTTAGGG TTTGCTTTTT TGCTGTTTAG ATCAAAGTTT TTTCTGATTC TTCTGTCCTC ATTGTGAACA 001760 001761 TAACCGTGTA GTTGAAACAG TCAAACTTAT TTTTGTAATG TATGTTATTG TGTGATGCAG TTTTTTGCTT CTGTCTCCAA 001840 001841 TATTAAACCA TTTTCCTAAT ACTTGTTTCT CTCTCTGCGT GTTGTATTGT TGGTAGTCAT TATATGTTGG TGATACATCT 001920 001921 GCACACCTCA CTGTTTCACG TATCTGTTTT TTTCTCTATG TTGTGTAAAA AGATACAGTC GATTCCACTT AAGTGAATAT 002000 002001 CTGATTTGGG GAAGAGGAAA CTGCACAGCA GCCACCTTTG ATTTATGTAC AACCGCCCAC TTGAACTCCT GCTTCCAAGA 002080 002081 TTTATACACT TTTTTCCTAC AGTTCACCTC AGTAACTGCC TTTGGGGTTG GATTTGCCAA GGTGTTTTAC GGTCTTTTGA 002160 002161 CCACACAGGT TAATTTCCCC TTCTCTCCCC TCCCTCATGA GTCTATCCAC GCAGTTCTTA ACATACATTC CAAACTGCTG 002240 002241 CGGGGTTTCC TCTCCACACC CACGAGGCCA AACCCGCATC ATTACAGTCC AACTCTTCTT AGACACTAAT CACTTTCTAA 002320 002321 AAGAAGTGAG TTCTCCAGGG AAGAAAAATC AACTTAGCCA GTGAAAAGGG TTAAACTTAA GTCTATTATT TGTTGCCCTC 002400 002401 AATCAAAAGA TATGTATAGA AAAGTCATTT AAATTATTTA TTTCTACAAG CTAATTGAAT CCAGGAGCAG CTTTAATTAT 002480 002481 TAACACTAAC GGAAGAGAAA AGAAGTATTT CCAAGGGCTC AAATGGAAGC TGTACTCAGT CCGGTGGAGG CAGGGGGAGG 002560 002561 TAAAGTTTCT CACACTCAAG TCGTCTTCAT AGTTTACTGT CCTTTTCCAA ACAAAAGCTA ATAACGCCAT ACGCATCCAC 002640 002641 ACACTCCCTC CTGGATGAAC CTAAGTCTCG TCCCCACTGT CACCCCAAGG CCAGTTATCA AAAACTGTTC CTTCTCTGCC 002720 002721 CTCAAAGACT GAAGCCGCAG GCCCTGTTCT GCCTCTGCTC AGGAATCTGA TTGCTCTTAA AGTGCTCTTA CAAGATTCCG 002800 002801 TCGATGTTTG CTCCCTCTGT CTTATCTCTC CTTCCAGTAT TTTCAGACGC ACAAGCTCTG ACTCAGGCCA CCCAGCACCT 002880 002881 GGCAGCCTTC CTCTGCGTGC CAGTGAAATC TCTCCCAGTA GGTGCTCAGG CTCTTCACCC TCTCGTTGCA GCAGCCCCTC 002960 002961 TGGCCCGAGA TTGTATTTTC TAGTCTGCTC AAGAACAGAG GGGCCTGGCG AGGTGGAGGA AGGGAGGCTC CCTCCCCGGG 003040 003041 GCTGGCCGCC TCAGTGATGG TGATGCCACC AGCTCCAGCC TGCACGGATG GAGCTCACTT CCTACCATCA CTTCTGCTTT 003120 003121 CAGTCTCCTC ATAGCCTTCG GCAGTCTCCT CTGAAAACAC ACTGCCTACG TTAGTGGGAA AGGATGGCTA AGGGTGTGAT 003200 003201 TTCTTTTTAT TAGGGAGGTG GGAGGGGGAT GTTGGGAGGC ATGGGGGGTG ATTAAATTAT CATTTCCAAG GTGCAAGTGT 003280 003281 TTATTTTTCA AATCTATAAG TACATAGTTC CACCATTTTG GCACAAGACA AAATACTCAT GCTAAGCAAA GGAAGAGAAA 003360 003361 GACAAAGCCA GTTTTTGTTG CTTTTCTAAA GCAACAAATA ATTCTCCAAA GAAGGGGATG AAAATGCTAG TTCCTTTAAG 003440 003441 CACTTACTGA CTGTAAAGTT GGTCCCTGCT TAAATTCATA CCCATAGTTT TGAGTCGGTA TGACACCACT GCAGTGTGAG 003520 003521 CAAGGTGAAT CCGTGTGCCA TGCATGGACC ACCTTGGGAT ACCGCAGCAC CATCAACATC CGCCTTGCTG ATGGAAGCCA 003600 003601 CACACGCTGC CCAGCCCACA GCAGTCGCAC GCAGCCGATG GGCTCGGACT CTTAGCTGGC AGGCTAGGAC ACACAGTGAA 003680 003681 CATTAATGTA CTGTGAATCG TTCCTGATAA GTGAATAAAA CATTGTGACC AAACAATCAG CTTATTCACT TATCAGGAAT 003760 003761 CGACTGTTCT GCTAATTTGC TGTTGTTGTT TTTCATCTCT GTTGTAGTTC ACTATTTTTG CTGTGTTCTG TTTTCTCCTC 003840 003841 TCATGCTTGG GCAAATCACT GGGAATATTA TCTTCATGTG ACCATGAAAC GTTTCTATTG AGTGAAAATG ATATCTTAAC 003920 003921 AAAATCTATG CACTTGCTAT CAGGAACACA ATACTGGATG TGTCTTATAT ATATTGAACT ATATAGTACT CGATTTCTTA 004000 004001 AATAAAGCTT AAGAAAGGAC TCTGTTGTGT GTAAAGTTAA TGTGATTATT TTTCAAAGCA GTGTTTCTAA GGGGTATTTT 004080 004081 TGTTCTTTTA AGTCTTGAGT GATACAGGAT ATTTTTCATT AAAATTATAT CACTGGCTTT ATGACTTAAT ATTCAATAAA 004160 004161 TTGACTTTGG AAAC |
Predicted Small Protein
Name | NONHSAT011397_smProtein_242:433 |
Length | 64 |
Molecular weight | 7089.4326 |
Aromaticity | 0.111111111111 |
Instability index | 51.5857142857 |
Isoelectric point | 8.93194580078 |
Runs | 7 |
Runs residual | 0.0338516358925 |
Runs probability | 0.0730310142075 |
Amino acid sequence | MQKNKKQHKRFLLIAHALPYNDMICIILTCVYYCWGLPSSSEGYFVLSAAISLITTLIAP VSL |
Secondary structure | LLLLHHHHHHHHHHHHHLLLLLLEEEEEEEEEEELLLLLLLHHHHHHHHHHHHHHHHLLL LLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH LLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT iii |