NONHSAT011397

From LncRNAWiki
Revision as of 15:42, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT011397

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4174 nt

Genomic location

chr10+:11047259..11378670

Exon number

2

Exons

11047259..11047403,11374642..11378670

Genome context

Sequence
000001 gaggagagGG CGCGTTAGTG AGCAGCGACT GTGGCATTGA TGTTTGAGCA TACTTCTGAA CTGGCTTTTG TTGAGACTAT 000080
000081 CAGTATAGAA GCATGCGCTG TCCCAAATCC GCTGTTACTA TGAGAAATGA AGAGCTGCTT TTAAGCTTCT TGGCCTCAGC 000160
000161 TCCCCTTCCC CGCTCAGCAC CCTGTTAGGA TCAGTGTGTG TGGATGGGAT AGCCCTGGGA TGGAAAGGAC TAGCCTCTAC 000240
000241 TGATGCAAAA AAACAAAAAG CAACACAAAC GTTTCCTTCT TATAGCACAT GCACTTCCTT ACAATGACAT GATTTGTATT 000320
000321 ATCCTCACAT GTGTTTACTA CTGCTGGGGC CTTCCTTCAT CCTCTGAGGG CTATTTTGTA CTTTCTGCAG CAATCAGCTT 000400
000401 AATAACAACA CTTATTGCAC CTGTCTCTCT CTGAGAACAC GGTGTGTCTC GACACGTACC ACGTACGTGG AAACACAAGA 000480
000481 GCCCACCACT TGAATTTCTA AGACCATTTC ATTCTGAAAC TTCTTATCAA TTACCTAAAT CTCAACGAAA AACAATTTAC 000560
000561 TGAAGCCGAC TCCCCTCCCC ATCTCCCTCT CAACCTCAAC CCACCTGCAT GCATCTCCCC CAGAGGAAAC ACTGAGGGTA 000640
000641 GGGGACAGGA GGCTCAGGAC GCGCCCTCTG AATCGAGTGT TTCTTCTTCA CAAGTCACCA AGAGAGGACA TGAGGGGGAA 000720
000721 AGTCCTTTTT GCCCTTCTCC AAAAAATAAC CTTCCACAGA GACAAACTGT CCTTCTATCC ACTTTTATCT TTTAATAAAT 000800
000801 ATCAAAAGGA AAAAGCTGCA AGGGTGCAAA GGGCCTGTGC CAGAAGAAAA CACACACAGG GAAACCGCTT TTTTTAATCA 000880
000881 ATTGTAGAGA ATAGTCATTT TTAATCTAAA TTAGAGAATT GTGATACAAT GGCAGTCCTC AAAGGCGTAA CGAGTTCATC 000960
000961 TTTCTTTCAC CATAGGGGTT ATAGTTGGCT TGTGCTACTC TGGAATCATT TTACTGTTTG TTTTTATTAT CTTAAGTGCt 001040
001041 aattaaaaaa aaaataaaat tttaaaaaaa CCTGTAGTTT CATTACCTTT TTGAATAATG TCATACAAAA AATGTATTTG 001120
001121 TTTTTTTGTG CTGTGAGAAT TGATGTTTGT AGATTAATAA TCATTTTGTT TAGAATTACA AAATAGTTTT TAAATATTGT 001200
001201 CTGAGAAAAG CCAAAGTTAA TGCAACCTAG TGGAAACTGT AAGACCATTT GAGTATTGTT TGTTTTATTG ATGCATTTGG 001280
001281 ATTTTGTTGT TTGATGGAAT TTGAGCCAAA AAAAAAATAC GCAGGCTTTC CTATTTCTAC AACTGATTGT ACTTATGCAT 001360
001361 TTTGTACCAG TGGAACTTTT TATACTGGAG ATTAAAAAAA AAATGGAAAT TTTTGTGGCT TGCTCTGGTG GGCCCCTGAC 001440
001441 AATGACTGAT TTCAAGTTTG ATTTCGGGtt gattgattga ttgattgatA GAAAGAAAGT TGCTTTTCTT TTGAGAATTA 001520
001521 AAAACTTTGG CTTGATTTCT TTTTTCCCTT TGCTTATATC TAGCATTAGA ATTTTGTCTT AAAATAACAG CGGTAAGTTT 001600
001601 CACTTTTTAT TCTGTATTGT GCAGTTACAC AATAAGGTAA TTAGATTTAG AAGTACTCAG TCACTTTAAG TGGATAAATG 001680
001681 TATTAGTTAA AACTTTAGGG TTTGCTTTTT TGCTGTTTAG ATCAAAGTTT TTTCTGATTC TTCTGTCCTC ATTGTGAACA 001760
001761 TAACCGTGTA GTTGAAACAG TCAAACTTAT TTTTGTAATG TATGTTATTG TGTGATGCAG TTTTTTGCTT CTGTCTCCAA 001840
001841 TATTAAACCA TTTTCCTAAT ACTTGTTTCT CTCTCTGCGT GTTGTATTGT TGGTAGTCAT TATATGTTGG TGATACATCT 001920
001921 GCACACCTCA CTGTTTCACG TATCTGTTTT TTTCTCTATG TTGTGTAAAA AGATACAGTC GATTCCACTT AAGTGAATAT 002000
002001 CTGATTTGGG GAAGAGGAAA CTGCACAGCA GCCACCTTTG ATTTATGTAC AACCGCCCAC TTGAACTCCT GCTTCCAAGA 002080
002081 TTTATACACT TTTTTCCTAC AGTTCACCTC AGTAACTGCC TTTGGGGTTG GATTTGCCAA GGTGTTTTAC GGTCTTTTGA 002160
002161 CCACACAGGT TAATTTCCCC TTCTCTCCCC TCCCTCATGA GTCTATCCAC GCAGTTCTTA ACATACATTC CAAACTGCTG 002240
002241 CGGGGTTTCC TCTCCACACC CACGAGGCCA AACCCGCATC ATTACAGTCC AACTCTTCTT AGACACTAAT CACTTTCTAA 002320
002321 AAGAAGTGAG TTCTCCAGGG AAGAAAAATC AACTTAGCCA GTGAAAAGGG TTAAACTTAA GTCTATTATT TGTTGCCCTC 002400
002401 AATCAAAAGA TATGTATAGA AAAGTCATTT AAATTATTTA TTTCTACAAG CTAATTGAAT CCAGGAGCAG CTTTAATTAT 002480
002481 TAACACTAAC GGAAGAGAAA AGAAGTATTT CCAAGGGCTC AAATGGAAGC TGTACTCAGT CCGGTGGAGG CAGGGGGAGG 002560
002561 TAAAGTTTCT CACACTCAAG TCGTCTTCAT AGTTTACTGT CCTTTTCCAA ACAAAAGCTA ATAACGCCAT ACGCATCCAC 002640
002641 ACACTCCCTC CTGGATGAAC CTAAGTCTCG TCCCCACTGT CACCCCAAGG CCAGTTATCA AAAACTGTTC CTTCTCTGCC 002720
002721 CTCAAAGACT GAAGCCGCAG GCCCTGTTCT GCCTCTGCTC AGGAATCTGA TTGCTCTTAA AGTGCTCTTA CAAGATTCCG 002800
002801 TCGATGTTTG CTCCCTCTGT CTTATCTCTC CTTCCAGTAT TTTCAGACGC ACAAGCTCTG ACTCAGGCCA CCCAGCACCT 002880
002881 GGCAGCCTTC CTCTGCGTGC CAGTGAAATC TCTCCCAGTA GGTGCTCAGG CTCTTCACCC TCTCGTTGCA GCAGCCCCTC 002960
002961 TGGCCCGAGA TTGTATTTTC TAGTCTGCTC AAGAACAGAG GGGCCTGGCG AGGTGGAGGA AGGGAGGCTC CCTCCCCGGG 003040
003041 GCTGGCCGCC TCAGTGATGG TGATGCCACC AGCTCCAGCC TGCACGGATG GAGCTCACTT CCTACCATCA CTTCTGCTTT 003120
003121 CAGTCTCCTC ATAGCCTTCG GCAGTCTCCT CTGAAAACAC ACTGCCTACG TTAGTGGGAA AGGATGGCTA AGGGTGTGAT 003200
003201 TTCTTTTTAT TAGGGAGGTG GGAGGGGGAT GTTGGGAGGC ATGGGGGGTG ATTAAATTAT CATTTCCAAG GTGCAAGTGT 003280
003281 TTATTTTTCA AATCTATAAG TACATAGTTC CACCATTTTG GCACAAGACA AAATACTCAT GCTAAGCAAA GGAAGAGAAA 003360
003361 GACAAAGCCA GTTTTTGTTG CTTTTCTAAA GCAACAAATA ATTCTCCAAA GAAGGGGATG AAAATGCTAG TTCCTTTAAG 003440
003441 CACTTACTGA CTGTAAAGTT GGTCCCTGCT TAAATTCATA CCCATAGTTT TGAGTCGGTA TGACACCACT GCAGTGTGAG 003520
003521 CAAGGTGAAT CCGTGTGCCA TGCATGGACC ACCTTGGGAT ACCGCAGCAC CATCAACATC CGCCTTGCTG ATGGAAGCCA 003600
003601 CACACGCTGC CCAGCCCACA GCAGTCGCAC GCAGCCGATG GGCTCGGACT CTTAGCTGGC AGGCTAGGAC ACACAGTGAA 003680
003681 CATTAATGTA CTGTGAATCG TTCCTGATAA GTGAATAAAA CATTGTGACC AAACAATCAG CTTATTCACT TATCAGGAAT 003760
003761 CGACTGTTCT GCTAATTTGC TGTTGTTGTT TTTCATCTCT GTTGTAGTTC ACTATTTTTG CTGTGTTCTG TTTTCTCCTC 003840
003841 TCATGCTTGG GCAAATCACT GGGAATATTA TCTTCATGTG ACCATGAAAC GTTTCTATTG AGTGAAAATG ATATCTTAAC 003920
003921 AAAATCTATG CACTTGCTAT CAGGAACACA ATACTGGATG TGTCTTATAT ATATTGAACT ATATAGTACT CGATTTCTTA 004000
004001 AATAAAGCTT AAGAAAGGAC TCTGTTGTGT GTAAAGTTAA TGTGATTATT TTTCAAAGCA GTGTTTCTAA GGGGTATTTT 004080
004081 TGTTCTTTTA AGTCTTGAGT GATACAGGAT ATTTTTCATT AAAATTATAT CACTGGCTTT ATGACTTAAT ATTCAATAAA 004160
004161 TTGACTTTGG AAAC
[back to top]

Predicted Small Protein

Name NONHSAT011397_smProtein_242:433
Length 64
Molecular weight 7089.4326
Aromaticity 0.111111111111
Instability index 51.5857142857
Isoelectric point 8.93194580078
Runs 7
Runs residual 0.0338516358925
Runs probability 0.0730310142075
Amino acid sequence MQKNKKQHKRFLLIAHALPYNDMICIILTCVYYCWGLPSSSEGYFVLSAAISLITTLIAP
VSL
Secondary structure LLLLHHHHHHHHHHHHHLLLLLLEEEEEEEEEEELLLLLLLHHHHHHHHHHHHHHHHLLL
LLL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH
LLL
PiMo iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT
iii