NONHSAT039186

From LncRNAWiki
Revision as of 17:05, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT039186

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1086 nt

Genomic location

chr14+:89883698..89886137

Exon number

2

Exons

89883698..89884140,89885504..89886137

Genome context

Sequence
000001 GGGGCACTGA CCCGCCGGGG CGGACCCTGC CCGCGCCCCC CGCGCGCCCC AGCACTGAGC CAGGGCGGAG GCCGGGGCTG 000080
000081 GGCCGCGCGG CCTCGCCTCT TGGGCCCCGC GGGGCGGGGG TGACCGGCGC GGGTCCCGCG ACCCAGGGCG GCCGCGACCG 000160
000161 TGGGCGGTGG GGCAGGTGGG TCAGGCGGCG CGTGCCCTGT CCCCTCCCCG GGCTCCGGCC ACACGAGCGG GCCGGCGCTG 000240
000241 CGCTGCTGGC AACGTGTCGC GGGAACGCTC CTACCCCATC TGCATGCCTT ACATGGCTCG AAAGTAAAAA TAAAAAGAAT 000320
000321 TACGATGCGG GCGAGGCTTG TGGGGGTGAG AAGAGGAGAT TCCACGTCTC CCCAGTGCTG CGTCCTGATA GGACCCCCAG 000400
000401 GGCCTTCCGA GCCCTCTCCC AGCGACCACC TCGTGTCCCG GAGTTGCAGC AAGAGATGTG AGAAGGTGTC ACCCTGAAGA 000480
000481 GGAAGTGGTG GACCAGCCCT GCCTGATGTG GACAGCAGGG GACACATGTC TGCCTGTCGG TCTATCTGAA ATGGGGGAAA 000560
000561 AAATGCTGAA AGCCAAAGGA GGGCTTAATG TGGCCTTTTC CACCTTCTAA TTCCATAGAA CCTCAGCTCT GGGACTTGCT 000640
000641 TCCTGACCTA GGGTGCAGGG GCCAAATTTG TTTGGGAACA ACCCCATTCA CAATTCCCCA TGAACTTTCA GAAAGGACCC 000720
000721 TTGCGTCTTA GGTCCTGAGA AGTCACAAAT AAGCAAGCTG CATTGTCTAA TGTCTTGTCT ACACTGTTTT ACAAACACAT 000800
000801 TTAACAGCCG AATTGTATAT GTGCCCTAGA AATCACTTTG AGAAACACTT ATTTCCTGAT AGAGGACTTG ATGGGACCAT 000880
000881 TCTGCAGCCC CATCTGAGCA TGGGCTGGAG AGTACATAAG TATCTGGGAG CTGGAAGTCC TCAATTCCAG GCTTATCTGC 000960
000961 CCCCATCAGC GTGGGACCTC AGTTCCTCCT CCAAGGAGAA GAGCGCCCCT CCCTTGATGT TTTGTGCATT CTTTTGCTAA 001040
001041 ATGTTTCTCT GGTCAAGAAC TTTAATCCCC CTACACAAAA AAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT039186_smProtein_818:1039
Length 74
Molecular weight 8267.4642
Aromaticity 0.13698630137
Instability index 52.2301369863
Isoelectric point 8.57415771484
Runs 11
Runs residual 0.00653999116217
Runs probability 0.0275248510542
Amino acid sequence MCPRNHFEKHLFPDRGLDGTILQPHLSMGWRVHKYLGAGSPQFQAYLPPSAWDLSSSSKE
KSAPPLMFCAFFC
Secondary structure LLLLLLLLLLLLLLLLLLLLELLLHHHLLHHHHHHHLLLLLLEEEELLLLLLLLLLLLLL
LLLLLLEEEEEEL
PRMN -
PiMo -