NONHSAT115498

From LncRNAWiki
Revision as of 21:11, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT115498

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2039 nt

Genomic location

chr6+:149704969..149707007

Exon number

1

Exons

149704969..149707007

Genome context

Sequence
000001 TCAGACTCCC AAAGTGCTGG GGTTACAGAC GTGAGCCACC GCACCTAGCT CAGTGACACA ATCTTGATCT AGTGTTTCAT 000080
000081 TCACTTAATT CAAGACAAAG GAGGCCTTTG CTGGAAAATG CATCTTTTCT GCTTTTACCC TACATAGTTC ACAGACACTC 000160
000161 TCTGCAGTTA CTAAACGGGG TGGCCTGAGT AATCCTGATC TTTAAGCAAG GATCTTTTCT AAACTCTGAG TGGTATGGGT 000240
000241 AAGAAAAAGA AAAGAAATAT CTCGGTCTTC TGCAGTGAAA TTGATTTTTC TAATGCTCCT GGAAATACTG TTTTAGAGTA 000320
000321 GAAAAATAAG TGGAGCCAGG CACTAGAATC ATAGGAAAAT ACTTTTTCCA AATTGAGAAG GGAACATACG TACATACATA 000400
000401 AATTTGGTAA CCAAAATGCA TTTTTTCTTT TTTCTTTTAA TCTACCATTT GAAATCTAAA ATACTGTGAT AAAAACTGTC 000480
000481 AAAAGTGAAA ATTTGTTTAT GAAAGGTATA TTGTTTAATA CATCCTCTAC TATAGAGTGA TCAGAAGCAA AAGAAGTAAA 000560
000561 TTAATGAAAC ATCAAGACCC CACTCATCTC AGCACTAAGT CTGTCAGCAC CACCATCCTT CCTAAAGGAA ATAAATTAAA 000640
000641 CTTGATTCCT TAAGGTACTA CAGGAATCAG AGACAAAAGT GGAAAGAACA AATTAAGGTT GGAGAGAAAT TTTCAGTTTA 000720
000721 AAGTTTATAG ATATGAAGAA AATTCTTATT TTACCCATTA AGAACAAATA CAGAAGTGAA ATTTTCTTAC TGGTAGTCAG 000800
000801 TGGTCAGATA TAGCTACATT TTCCCCTTAA GTCATACCAC CCAACTCTAG CTTCCAAAAA ATGTTGAAAA CTATCATTCA 000880
000881 GCATATTCTG AGACATTCTA GTGTCTTCAT AGTGGTATAC CTGTTGTAAC ACTGGCAACT TTTATAGGTA TGGAGGACAA 000960
000961 AGCATTCCAA CAAATTTTCA TGGTGGAGAG AAAAAGGCCT ACTTTCTTAT TTTGTTACAG AAGCCAGAAA CTCTTAAAAA 001040
001041 AAACTAACAT TGCTGCCAAA TACAATTTCC ACACAACTCC ATCTGTGGTA TTGACTTAGC TGGTAAACTT TTTATTATTT 001120
001121 AAAGAAAAAA AATTACATAT ATAAAATGAT AAATATTTTT AATGATACTT TAATATGGTT TTTCCTCAGT TATGTTTAAA 001200
001201 GTCCTACCAT AGTGTTAAGC AGTAGCCTTG ACTTTGAACC TAAAATAGAA ATACAAGTAA GAAAAATTAT GAGTTGAAAA 001280
001281 TTAGCTTCTT GGACTTTGTG TTTCTCATTC CTTACCATTT TTCACTAGTA CATCTATCCA AATCACAACA CGTTTCTTTT 001360
001361 TAATGAGATT TAATAAAAAA TGTTTATTGT GGCACAAATT CAATGAGCAA GATACTCTTC AAAAGGAAAT ATAATTTTAT 001440
001441 TTAGTTCAGA TTCTAAAACT TGTACTTTGT TTAACTTTAT GTATCTTTTC ATTGGAAATA CCTTTTTGTT ATTCTTTGTT 001520
001521 GACATTGAAA TCACTTTATT AAATAAAAGC CTACTGCAGT AGCACATGCC TGTAGTTCGA GCTACTCGGG AGTCTGAGGC 001600
001601 AGGAAGACTG CTTGAGTGCA GGAGTTCAAG ACCAGCCAGG GCAATGTAGC AAGACTTTGT CTCTAAAATA ACAATAATAA 001680
001681 ACTCAGCAAT TAAGATTAGT TGACATTGGA CCACTTACAG AATATTTTTT TCAAATTAGC CCTACTACTT GTAGGTTCCT 001760
001761 CCCAGTCTTA AGACTAAATA CCTTTTTAAT TTGGGGTAAA TGTCAGAATT GGAAGAGACT TTAAAGGGCA TGAAGAATTC 001840
001841 TACTCCAAAG GTTATCCAGT CCACGTACCC ATCCAGCCTA TCAAGTGTAA ATCCTTTCTG TACTTTAAAT TCTTATGAGA 001920
001921 CACAAACTGC CTCCTAAGGT AGCATATTCT GGTTTTGGAG AGCTCTACCT ACTAGCTGGT TATTTCTTAC ATTAAATTAA 002000
002001 TACCTTTAAA AAGTATTATG AAAATAACAC ACTCAGTAA
[back to top]

Predicted Small Protein

Name NONHSAT115498_smProtein_1799:1936
Length 46
Molecular weight 4930.4534
Aromaticity 0.0666666666667
Instability index 58.2866666667
Isoelectric point 4.94464111328
Runs 9
Runs residual 0.0377525252525
Runs probability 0.0482541364894
Amino acid sequence MSELEETLKGMKNSTPKVIQSTYPSSLSSVNPFCTLNSYETQTAS
Secondary structure LLHHHHHHHHHLLLLLLEEEEELLLLLLLLLLEEELLLLEEEELL
PRMN -
PiMo -