NONHSAT135504
Revision as of 22:39, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT135504 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4041 nt |
Genomic location |
chr9-:139149260..139161211 |
Exon number |
7 |
Exons |
139149260..139151294,139151966..139152110,139154157..139154308,139155469..139155644,139157802..139157889,139159230..139159357,139159895..139161211 |
Genome context |
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Sequence |
000001 ataaacattc ttaagctttc ttcgggactg cagttattta gaagtaattt ggtcctttca gacttttcat taatagtgtg 000080
000081 ttaggtcgat ctggatcagt gctcagcctg gggctaatca tttccgacag tcaaggcaag aacgttctgt gtacactgcc 000160 000161 tgcccagtga cctgggagtc ctaaggtcct ccagcctgac tactggaaac aggcgtcatt accaggcttc cagtcccccg 000240 000241 gaacgcttct gtcccagcat ctggtagctt cttgacacgc attcatccat cagttctcta ctgaatactc cagagggaca 000320 000321 cttgatacat ctcagaggtc ctctctctgt gcgactctct cctctctgac actctgcccc cacaaactcc agctgccttg 000400 000401 gtcctcccag actctctgct gtctcctcta cccagggagt cctccagctc agccagcttc ccctccctca ccatagcctg 000480 000481 gcaactctct gaggcagtaa gccgtgagca tcgcaagtct cctcccctcc tttgttttct gtctctcagg gatcactgtg 000560 000561 ctatgttgcc tcaagtccag tgcctggaaa actgttattt catatgtGTG TGTGAAAAAa tatatatata tgtatacaca 000640 000641 cacatatctc tatataaaca cacatgtgtg tgtgtattta CGTGATTTTT TCAGTTGTTG CAGATGGGAT GGCAAAGCCA 000720 000721 AAATCCAGTC CCTTTTGCTC TGTCTTTGGT GGGAGGGAAC GTCCTTAAGG ATCGCTTGAA GTACAGGCTC CTTTTTCCAT 000800 000801 CACTCAGAAC AGAAGCATGG CCAGCAGAGG TCGGCAGCAG GTCAGCTACT TCAGCTGGGG ATCTGGGATC TGCTGTCACC 000880 000881 TGCCAGCTCC TTGGTGCTAG ACCCCGACAG CCCTTCTCCC TCTCTGGGCC TCACTCTCCC CTCCTTTAGA AGCCTGTAGA 000960 000961 CGCAGAGCAG CTGGGCTGTC TCCCTGAGCT TCCTCTACTT TTGGTCTGGT CTTTCCCATG ATCAGTAGGG TCACAAACCA 001040 001041 CAACTTCACA TCAAGAGACT GCCTGTCCCT TCCCGCGTGG TCTTGTGGAT TCTGCGTGAA GCCCTGTGTG TCCGGGATGG 001120 001121 GATGGGGACA CTAAACTGCC CTAGACCTCC TACTTTTATG AGGCCCTCCG GTAGAAATGG CCCCTGACAC GGGGCACTCA 001200 001201 GACCCCCTAC ATGACCCAAC CATGGCGCTT CCTTCCTCAG AGGTGGAGGG CCCTGACGGA GCCCTCTCCC AGCTTCCCCT 001280 001281 GGCCAAGTTC TTCCCTCCGG ACAACCCCAC CCACCAGATG CTGGAGCGGA GCCTGCGGGA GGAGGAGCTG CGAGCACAGC 001360 001361 ACCAGGCCGC GCTGCTGCGC CTGCGAGAGA TGGCGCTCCA GGAGAAAACG CTCGCGGAGC TGGCCTGGCT GGAGCATCGA 001440 001441 CGAGGGTGCC TGGACAGCAA GAGGGACAGA GCTGTGCTGG CCGCGCTGGT TGAGAAGCAG CAGCAAGCCC TCAGCAGATT 001520 001521 GGAGAAGGAG CAGAGGGAAA TCCAATACCT GAGACACACG CAGCTGTTCA GGCACCGGGA CAGGAAGCTG CTTCTGCAGC 001600 001601 ATCAGAGGGA CGTCGTCTCC ATGCCGGGGC CTGTGGACAT CCTCCCCATC CCGGGGCCCA CGGACGTCGT CCCAGCGCAC 001680 001681 GAGCTGCAGG CCCAGGCCAA GCTGCAGCAG GTTCCAGCCC CAAAGTCAAG GCCGCCTGGG AGGGAGGCTC AGAGACAAGC 001760 001761 CAGCAGCCAG AGGCCTCCCT GTGTCCCCTG ACCCCATGCA GGCCCAGCAG CTCCACCAGC CATCGCCCCC AGAGCAGCCC 001840 001841 CGCAAGCTCA AAGGCCACGC GCCCTCCCAC TGAGCAGCAG GATGTGACGC CACCCCAGAC AACCTCCGAT GCAGATGGTC 001920 001921 ACCAGCAGCC TCCGAGGCCA GCATGGGGCG AGGACACACA CGACCCCCAG GGCCCGCTGG TGGAGAGTGG CAGCCATGTC 002000 002001 AGTCAAAGCC TGGGGAGCAG CCTCGGGCCC CTCTGCTGGG CCTGCAGCAC GTGAGCCCCC CGGACGGACA GCGGCTGGGC 002080 002081 CCAGCCTTTC CCGTACGCAC TCTCCCTGGA AGCCCTTTCC CCAGCACCGC CTGTTTCAGG GACCACCCCC CCCCAACATT 002160 002161 CTGCCAATCT GTGACTTGAT CTTCATCTTG GTACCCTCCC CCCCAACATT CTGCCAATCT GTGACTTGAT CTTCATCTTG 002240 002241 GTTGGGGCCC CTTGGTTCCT GTGGCCGGTC CTTGGTTCCT GCAGTGGGTC CCTGTTTGTC CCTGCctgtc cccatctgtc 002320 002321 cctgtccgcc cccggctgtc cccatccacc ccagtctgtc cccatctgtc cccatcCATC CTGGTCTATC CCTGGCCCTT 002400 002401 GGTGCCCTCC CTTCAGGGCC CTGTGCCATG TCCACTCCCG TCTCACCCCC CAGGCCGAGG AGGCGGAGGG GCGCCTCCCC 002480 002481 ACAGCTCAGT GCAGGTCTCG GGAGGTGAAG GAGCCACCCC CAGGTAAGCA CCCTGGAAAC ACCGCGTGGG CCTCCACGGC 002560 002561 GCCAGACACT TCCCCCACAT CCAGCAGAGC CTGTCCGAGG CTGGAGCTCA GCCACTGGAC AAGGACGGAA AGCAAAGAAG 002640 002641 ATGGGCCCTG GTGGCCCCCC ACCCTGGCCT CAGACCCCTT CACTGCAAGA AGAGTGGCCG GCTCCATCTC CTACCGGAGG 002720 002721 TGACGCAGCG GCTCTTCTGG AGAAATTAAA AGTCATAACT GGCTGGGATT GTTTTAGTCG CAACTTCGTT CATCTGGGGC 002800 002801 AGATTTTTAA GTGTTTGGAA GCCAGCACTG CCTGAGCGTC TTCAGCTGAC GGAGGTTTCT GCACCGATTA CATTTTTCTC 002880 002881 TTTCTGAACC TTACACTTGG CCGGGGCCCC CCCCGAGAGC CAAGTCCCCA ATTTGCAGGT GGGGCGGGAG CAGATGCACT 002960 002961 CACAGTGTCA GGGAACCCTG GTGGTGCGTC TGGTAGCCGC CGGCTGAAGA GTGGGGGGTT GTGTGCCCTG CGATGCCACC 003040 003041 TCGGAGCTCC CTGACCAGCC CTGGGTGCCG AATTCAGAAG GCCCCCACCC AGTGTCCATC CTCGGAAGCA GGGAGACTAT 003120 003121 GCCACCCAAG GGGGGTGGCA TAGACTGGGG GGTCCCTGCC GTTGGGGCCA GGGAGAGCAA ACCTCAGGAC AGATGGGTTG 003200 003201 AGACGGAAAG AGATCAGAAG CACTTGTGGG GCTGCCCAGG AGAGCGTGGC TGGTGGGGCT CCCTGGAGAG GCCAGTGACA 003280 003281 CTGGGAGGCG GAGTGAATAC AGAGCGCTTT CCCTCTGTGT CCCGCGTCAC CTCCGGGCCT GCGCTGTTCA GGCTTCTGCG 003360 003361 GCCACCGTGA AGCTTGCTCA GCCTGAAGCC TCCCTCGCCG CATGGCCACG TGTACCAGCT GTCACCGTTC GGGGGGCCAG 003440 003441 CCAGGCGCCT GCACCCACCA TGGGTCCTCG TTGCCTCTGG AGGTGGATTC ACTCGTTATG CCCACGCAGC AGAGGAGGAG 003520 003521 CCTGAGGCCT GACTTATGTT CTCACGTGGT CTAGGGTTCA CCCTGAGTCT GCCTGACTGC GGTGCCGGCC GCTCTCTGAT 003600 003601 CAAAAGACTG CGCTTGCAGG GGCTCCCTGG GTGACGCCCC ATTGTGGTCG CTGGGGTCAC CCGGAGCCAC GGACAAGAGG 003680 003681 GCAGGTGTTC CCACTGATGG AGCTTCCCCC TCCTTGGGCT TTAGACAAAC AGCTCTGGTT CCCTTAGCCA GGTGGCCTTG 003760 003761 GCTCTCAGAG TCCCCTGACC CCACAGAACG AAAGTCTAGG GAGATGGAGG TGCAATGCTG GGGGGCCTGG TGCTCCTGGG 003840 003841 GAGGGCTCTG CGGTGGCCCC ACCCGTCCCT TTGTCCCCCT TTGTGATCCC CGGCGGTGCA CTGGTGGCCT TGCTGTGTCC 003920 003921 GAGGCCTGCC CCCCACCGGC CCTCTGCACC ACCCCTGCCT CACACCAGTG TCTGTCGGAC GGCACCGAGG GGGAAGAACA 004000 004001 AGCTCTGGCA AAAGGTTTCC CCCAAGGGAG GGAAAGAGGC C |
Predicted Small Protein
Name | NONHSAT135504_smProtein_3401:3553 |
Length | 51 |
Molecular weight | 5345.0458 |
Aromaticity | 0.0 |
Instability index | 104.594 |
Isoelectric point | 7.75604248047 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.00720468367527 |
Amino acid sequence | MATCTSCHRSGGQPGACTHHGSSLPLEVDSLVMPTQQRRSLRPDLCSHVV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLEEELEEELLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |