NONHSAT071042
Revision as of 18:22, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071042 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2026 nt |
Genomic location |
chr2-:63271057..63274846 |
Exon number |
4 |
Exons |
63271057..63272578,63273172..63273276,63273617..63273782,63274571..63274846 |
Genome context |
|
Sequence |
000001 GGGCCTTACC CCGCCAGGCG CCGGAGTCCA CGCTCCACCG CCGCTGAGGG GCGTTCGGGC GCCACCGAGC AGCCCAAATT 000080
000081 GAAACCCCGA GAGGCTCGGG ACTAAAGCTG AAGGGGCAGG TAGAGGGGCC GCCCGGCGGT CCCAGACCAT CCTAGCAAAT 000160 000161 CTGGGGCGAG GGAAGGGTTG TCAGTTGGCC GATTGGGAGC GGCTTCGGGA GCGAAGGAGC TGCTTTTCGG CGAGGCCCCT 000240 000241 CGGGAGTGAA GGTTCCTCGA ATCAAGCGTA AACTGGGGCC CCCTCTGGGA TGGTGTAAAC TTATTCAGCT TCAAATGCAG 000320 000321 CCCAGTATCC TGCCCTAAGT TCCAGAGGAC CATTTTCCAC ATGAAAAGTC TTACGGATAG ACAAACTTCC ATTCAAGCCA 000400 000401 ATGTCAAGTT TTCATTGCAA GAAAGTAGCA GCCGTGTTTA AGGGCTTGTT TCTGGCTATG TTAAAGGACC ATCCTCTGAG 000480 000481 GAAAGCAGAG GAGAGGAACT CCATTATCCT TACAGTGAAA CGCAACCACT GCAGAAAAAC TCCACTGAGT TCGCTCCAAA 000560 000561 TGCTCATCTT CTTCTTCGGC CCTGGATGTC AGACAAACAG GACAAACAGG AAACAAAATT ATTTTTCTTC GTGGAGGGCA 000640 000641 GAGCAGCACT CCCCCGTCGC CCAGTATTTG GATCCCCAGC GGGAATGGGG AGCACCAGGC CAGTGGGAGG CTGCCCCGGC 000720 000721 CCTCCCGCGA CCTCTGGATT GAACTTTCCG CACACTTCTC GGCCCCTCGG CAGGTGGCCC AGCCTCGACC CGACCCCACT 000800 000801 GCCCACTCAC TGCTTCTCCT GCGCGTCCAG GTCCCTGACG AGCGCATCGC GCTTGTTCAC CAGGGCCACC AGCTCATCTA 000880 000881 GCAGAAGCTG TTCGCGTCGC TTCTGGGCCT CGGTCTTCTG CCAGTCTGCA GAAGACGGGA GGCTAGTTAC CCACCGGCAG 000960 000961 GGCCTCCGAA CACCCGGCCC CCCGCCCTCC CCTTCCCGCC TTTTCCAGTT TCCTTATATT TCTCAGCAAA CCACATTATA 001040 001041 GAGCCACTAG CTAGTGTTTT CTGGGGAGTT TGGCTGTTGT GGTGAAGGCT TCCTCGCTAA AAGTCTACTT CCTAAACAGG 001120 001121 TCCTGTGAAT GGAGATGGCT GCAGCAGTGT TGGAACCTGC TTAGAACCAG GTGTGAACTG GTGGCTAGCC TGAGGTGCGC 001200 001201 ACCTGAATCC AGCCAAAGTG GGGGAGGGGA GCTAGAGGCC CAGAAGAGGT TGGCCCAGGG GTTGGTAGTG GGGGAAGTGG 001280 001281 GTAAATGAGG AGGCGGGAAA CAGTGATGGG CGATAAAATC ATTCTGAAAA GGCTAGAGAA TCTGCCTGAG AACCTATCCT 001360 001361 CCTCCCCCAC CCCCACTCTC ACCCCAAACA GCCCATTCTT CGCTAATTTC CTCTTCGCTC TATTTTAGCA GTTGGATGTA 001440 001441 TCTCACACTG GGCGCCATAT GCTTCACAAT AACTTTAAAA GTAGTGAATC GGCTAATTAG CATTTTTCTT TGAAGTAAAA 001520 001521 AATAAATTTG CTCTGCAATA TTACACTGCA GCTCTCGATC GCATCACAGC CAGTTTTCTT TTGGAGACGT TTGCTGGGTG 001600 001601 GTTTCAAATC AAAGCACTTT TGCAAAGGAA AAATTACATA TTTCTTTCTG AAACCCTATG TTAAAGGTTG GAAAACCCGA 001680 001681 TGGGCAGTGC TCTTTCCATG GATGGGGGGC GTTTTTTTTT TTTTTTTTTG AAGGTTTTAG ACCCCAATAA TATATTTCCT 001760 001761 AATCTTTGCT GGTCTGATGA TTTCCTTAAG ATGAGCAGCA GTTTCATTTA ATAGAAACAG GACCAAATCG AACATTTAAA 001840 001841 ACACTTTTGA AACCAAAGCC AACTGCTCTC TGGCCAGACT GTAAGGGCTT GTAGCTGTCA ATCAACCCCC AGTCTACCCC 001920 001921 GCCTCCCTCA TTAGGAAGGT AAACAATGAA AAGAAGAAGT AGATGATGAG GCAGATAGCA GAACAAATGA GGACCTAGAG 002000 002001 GGAAACAGGA CACCAGCTTA AAAAAA |
Predicted Small Protein
Name | NONHSAT071042_smProtein_1679:1810 |
Length | 44 |
Molecular weight | 4943.6944 |
Aromaticity | 0.209302325581 |
Instability index | 51.923255814 |
Isoelectric point | 4.57611083984 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0463825169707 |
Amino acid sequence | MGSALSMDGGRFFFFFLKVLDPNNIFPNLCWSDDFLKMSSSFI |
Secondary structure | LLLEEELLLLEEEEEEEEELLLLLLLLLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |