NONHSAT094406
Revision as of 13:15, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094406 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1723 nt |
Genomic location |
chr3-:197232135..197233857 |
Exon number |
1 |
Exons |
197232135..197233857 |
Genome context |
|
Sequence |
000001 CCTCACAAGA TCCAGACCCC ACAAGATCCA GACCTCGGCT ATCTGGCttc tctttttttt gcgacagagt ctcaatctgt 000080
000081 cacccaggct ggagcgcagt ggtgtgatct cagctcactg caacctctgc ctcccaggtt caagcaattc tcctgcctca 000160 000161 gcctcccgag tagctgggat cacaggtgtg cgccatgcct ggctaaattt tttttttttt ttttgtattt ttagtagaga 000240 000241 tggggtttcg ctatgttggc caagctggtc tcgaacccct gacctcaggt gatccacctg cctcgacctc tcagagtgct 000320 000321 gggattacag gcgtgagcca ctgcacccag ccCCATCTGA CTTCTATACC CGCAGCCCCT TCCTTTACCC TCAGGCTGCC 000400 000401 TCAGTCTCCA CACTGGGGCC CAGAGCTGGG CTGGACTCAG CGCAGTCAGA ACCTCGCCTT GCACGTGGCG AAGGAGCggc 000480 000481 aggcaggcag gcaggcaggc aggcaagcag gACAGCCAGC TTCCTCCTAG TCCGCAGTTT CGCGGAGCAG CCTGGAAAGG 000560 000561 GAGGCCCAGG CTTCCCTGTC TCGTCGCACG TGTGTCTGCA GTGTCTGTGC TATCTCCCAG GGGCCTGGAT GTCGATGGAA 000640 000641 TGCCTGAGGG TGGAGAGAGC TGTGGCTGAG GCCTACCCTG GCGGCCTCAG CATCTGTGGA GATGTGTAGA GACAGGGAGA 000720 000721 GTGAATGGGG ACCAACCTCA GGAGATGCTG GGTCCCAGAA GCACCATGTG CTTCTCCTTT GGTGAGACTT AATTACTCTC 000800 000801 TAAAATGTAA GGCTACTCCC ACTTATCAAA TTATAGATGA GTTTAATTAC AGCACACTGA GTAACCACAC TGGGCTCCTT 000880 000881 CAGAAATAGC AGCAGGCTGG TTGCTCTTCT CAGCTTCAGC TGTAGCCACC CCAGTTTCAG GAGGAAGTGC CCGTGGTTCC 000960 000961 TGGGGCCTGG AAGTGCCGCT CAACTCTGCT GCCAGACAAG TGCGGGCGTG GTGGACTGCA CTGGGTACAC TGCTGTACCG 001040 001041 GCCACCACCC TCCGGCCACT CTCAGCCGGT GAGTGCTCTG CGGGGCCATC TGGCCACGTG TTCTGTGACT GGGTCATTTA 001120 001121 CTCTGCTGCA ACCTCTCTTT CTCCTACCTA CATCGTGTTC TGGATAAAGG TTTTGGCTCA TAATGTCCGA CCAGAGGTGG 001200 001201 ACAAAGTGGT GTGGGACCTG CCGTAAGAAA CAGGGAGCAT GGTGCGGGGA GAGAAGCCTG TGCCTTATGG AGACTCGGGG 001280 001281 CACCTTCAGG AAGCAGGGTC AACAGCAGCA GGCCGCTAGG GAGTCGGGAG AGCTCGGTGA TGTCACGAGG GGCATCAGAC 001360 001361 TCTTCCCTGC AGGCTGGCGG GACTGATGGG CTCTCGTTCC AATGGAGGTA CAATGGGACT TCCGGGGCTG TGATGGGAAG 001440 001441 GGCGGAGGAG CTGCCGATGG TCCCAGTGCC ATATTAGTGT CACATTCTGA GGGGCAGCCC TGTGCCGGAC GGCAGCTGCT 001520 001521 ACCTCTCCCT CTGCCCCTTT ATTACTTGAA TCTCTTCGTT GTGCCCTGTC TAGGCACGGT CGTCCGACAG CAGGCAGCCC 001600 001601 ACTGCCCTCC CAGAGCTCAC TGTCTAGCCC AGGGTGACAC AGGGTAACCG TGGGCATGAC TTGGGCCGGG AAGTGAGAGG 001680 001681 CTCGATTCCA TCACATGTAA ATAAAAATAC TCATTTTCAA TCT |
Predicted Small Protein
Name | NONHSAT094406_smProtein_239:529 |
Length | 97 |
Molecular weight | 10069.0823 |
Aromaticity | 0.0520833333333 |
Instability index | 62.553125 |
Isoelectric point | 10.022277832 |
Runs | 9 |
Runs residual | 0.040485395189 |
Runs probability | 0.0428958370135 |
Amino acid sequence | MGFRYVGQAGLEPLTSGDPPASTSQSAGITGVSHCTQPHLTSIPAAPSFTLRLPQSPHWG PELGWTQRSQNLALHVAKERQAGRQAGRQAGQPASS |
Secondary structure | LLEEEEELLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLEEELLLLLLLLL LLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLL |
PRMN | - |
PiMo | - |