NONHSAT094546
Revision as of 13:18, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094546 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1895 nt |
Genomic location |
chr4-:419224..467998 |
Exon number |
3 |
Exons |
419224..420762,466364..466490,467770..467998 |
Genome context |
|
Sequence |
000001 ACTGCCCAAT CAGGCGCGCA GTCTGAGAGG AGGGGGCGGC ATCCGGGATC TTCGGCGGCC TTGGCCTGTT GCTTCAGCCT 000080
000081 GAGCTCGGTT AGGGCCTCAC TTCCCTGCTT CCACACCTCA GGGAGGCCTC GGTGATTTTG CCAGAGCCTC AGCCTCCATC 000160 000161 GCTCTGTAAC CTGCGGGTAT TGGATGATTC GTAGCTAAGA CTTCGCGACA CCCTTGAAGC TGAGAAATGG AACCCTTAAC 000240 000241 ATTCAGGGAT GTGGCCATAG AATTCTCTCC AGAAGAGTGG AAATGCCTGG ACCCTGCCCA GCAGAATTTG TATAGAGATG 000320 000321 TGATGTTGGA GAACTACAGA AACCTGGTCT CCCTAGGTGT CTGGAAATGA AGTATGGAAA TGAAATCATG AATAAAGACC 000400 000401 CAGTTTTCAG AATCTCTCCA CGAAGTAGAG GAACTCATAC CAATCCAGAA GAGCCTGAAG AAGATGTTCA AGCTGAAAGA 000480 000481 GTCCAAGCAG CAAATGCACT CACTACTCCA AACTTGGAGG AGGAACCAGT CATAACTGCA AGCTGTTTAC ACAAGGAATA 000560 000561 TTATGAGACA AAGAAAGTTG CTTTTCAACA ACAAAGAAGA AAGCAGCCAT CAGAAATGTT TCGTTTTGTG TTAAAAAGTG 000640 000641 AAGTTTTGGG ATTACTAGGA CACAATGGAG CTGGCAAAAG TACTTCCATT AAAATGATAA CTGGGTGCAC AGTGCCAACT 000720 000721 GCAGGAGTGG TGGTGTTACA AGGCAACAGA GCATCAGTAA GGCAACAGCG TGACAACAGC CTCAAGTTCT TGGGTACTGC 000800 000801 CCTCAGGAGA ACTCACTGTG TCCCAAACTT ACAATGAAAG AGCATTTGGA GTTGTATGCA GCCGTGAAAG GACTGGGCAA 000880 000881 AGATGCTGCT CTTAGTATTT CATGATTGGT GGAAGCTCTC AAGCTCCAGG AGCAACTTAA GGCTCCCGTG AAAACTCTAT 000960 000961 CAGAGGGAAT AAAGAGAAAG CTATGCTTCG TGCTGAGCAT ACTGGGGAAC CCATCAGTGG TGCTTCTAGA CGAGCTGTTC 001040 001041 ACCGGGATGG ACCCTGAGGG GCAGCAGCAA ATGTGGCAGA TACTTCAGGC TACCATTAAA AACCAGGAGA GGGGCGCCCT 001120 001121 CTTGACCACC CATTACATGT CAGAGGCTAA GTCTCTGTGT GACCGTGTGG CCATCATGGT GTCAGGAACG CTAAGGTGTA 001200 001201 TTGGTTCCAT TCAACAGCTG AAAAGTTTGG TAAAGATTAT TTACTAGAAA TAAAAATGAA AGAACCTACT CAGGTGGAAG 001280 001281 CTCTCCACAC AGAGATTTTG AAGCTTTTCC CACAGGCTGC TTGGCAGGAA AGATATTCCT CTTTAATGGC ATGTAAGTTA 001360 001361 CCTGTGGAGG ATGTCCACCC TCTGTCTCAG GCCTTTTTCA AATTAAAGGC AGTGAAACAG ACCTTCAACC TGGAGGAATA 001440 001441 CAGCCTCTCT CAGGCTACCT TGGAGCAGGT GTTCTTAGAA CTCTGTAAAG AGCAGGCGCT GGGAAATGTT GATGATAAAA 001520 001521 TTGATATAAC AGTTCGATGG AAACTTCTCC CACGGGAAGA TTCTTAAAAC GAAGAACCTC CTAACATTCA ATTTTAAGTC 001600 001601 CTACTGCATT ATTAGTTTCC ATAATTCTAC AAGAATGTTT CCTTTTACTT CAGTTAACAA AAGAAAATAT TCAATAGTTT 001680 001681 AAACATGCAA CAATGATTAA AGTTTTCATT TTTAAAAATT TTAGGATGAA GGAAACAAGG AAATATAGGG AAAAGTAGCA 001760 001761 GACAAAATTA ACAAACTCAG ACATGTTATT CATCCCCAAC ATGGGTCTAT TTTGTGCTTA AAAATAATTT TAAAATCATA 001840 001841 AAATATTAGG TTTGTTTTTG GTTATTATCA ATAAAGTTAA CACTGAGCAC ATTTT |
Predicted Small Protein
Name | NONHSAT094546_smProtein_1046:1246 |
Length | 67 |
Molecular weight | 7467.7135 |
Aromaticity | 0.0454545454545 |
Instability index | 50.3 |
Isoelectric point | 8.73797607422 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0387660387661 |
Amino acid sequence | MDPEGQQQMWQILQATIKNQERGALLTTHYMSEAKSLCDRVAIMVSGTLRCIGSIQQLKS LVKIIY |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHLLLEEEEELLLHHHHLHHHHHHH HHHHHL |
PRMN | - |
PiMo | - |