NONHSAT094549
Revision as of 13:18, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094549 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1423 nt |
Genomic location |
chr4-:419604..467840 |
Exon number |
4 |
Exons |
419604..420762,431235..431300,466364..466490,467770..467840 |
Genome context |
|
Sequence |
000001 TCGCTCTGTA ACCTGCGGGT ATTGGATGAT TCGTAGCTAA GACTTCGCGA CACCCTTGAA GCTGAGAAAT GGAACCCTTA 000080
000081 ACATTCAGGG ATGTGGCCAT AGAATTCTCT CCAGAAGAGT GGAAATGCCT GGACCCTGCC CAGCAGAATT TGTATAGAGA 000160 000161 TGTGATGTTG GAGAACTACA GAAACCTGGT CTCCCTAGag gaaggaacag agccacagag aaaaatgact tgctcacaac 000240 000241 agaagagcca gtagtaaaac acagGTGTCT GGAAATGAAG TATGGAAATG AAATCATGAA TAAAGACCCA GTTTTCAGAA 000320 000321 TCTCTCCACG AAGTAGAGGA ACTCATACCA ATCCAGAAGA GCCTGAAGAA GATGTTCAAG CTGAAAGAGT CCAAGCAGCA 000400 000401 AATGCACTCA CTACTCCAAA CTTGGAGGAG GAACCAGTCA TAACTGCAAG CTGTTTACAC AAGGAATATT ATGAGACAAA 000480 000481 GAAAGTTGCT TTTCAACAAC AAAGAAGAAA GCAGCCATCA GAAATGTTTC GTTTTGTGTT AAAAAGTGAA GTTTTGGGAT 000560 000561 TACTAGGACA CAATGGAGCT GGCAAAAGTA CTTCCATTAA AATGATAACT GGGTGCACAG TGCCAACTGC AGGAGTGGTG 000640 000641 GTGTTACAAG GCAACAGAGC ATCAGTAAGG CAACAGCGTG ACAACAGCCT CAAGTTCTTG GGTACTGCCC TCAGGAGAAC 000720 000721 TCACTGTGTC CCAAACTTAC AATGAAAGAG CATTTGGAGT TGTATGCAGC CGTGAAAGGA CTGGGCAAAG ATGCTGCTCT 000800 000801 TAGTATTTCA TGATTGGTGG AAGCTCTCAA GCTCCAGGAG CAACTTAAGG CTCCCGTGAA AACTCTATCA GAGGGAATAA 000880 000881 AGAGAAAGCT ATGCTTCGTG CTGAGCATAC TGGGGAACCC ATCAGTGGTG CTTCTAGACG AGCTGTTCAC CGGGATGGAC 000960 000961 CCTGAGGGGC AGCAGCAAAT GTGGCAGATA CTTCAGGCTA CCATTAAAAA CCAGGAGAGG GGCGCCCTCT TGACCACCCA 001040 001041 TTACATGTCA GAGGCTAAGT CTCTGTGTGA CCGTGTGGCC ATCATGGTGT CAGGAACGCT AAGGTGTATT GGTTCCATTC 001120 001121 AACAGCTGAA AAGTTTGGTA AAGATTATTT ACTAGAAATA AAAATGAAAG AACCTACTCA GGTGGAAGCT CTCCACACAG 001200 001201 AGATTTTGAA GCTTTTCCCA CAGGCTGCTT GGCAGGAAAG ATATTCCTCT TTAATGGCAT GTAAGTTACC TGTGGAGGAT 001280 001281 GTCCACCCTC TGTCTCAGGC CTTTTTCAAA TTAAAGGCAG TGAAACAGAC CTTCAACCTG GAGGAATACA GCCTCTCTCA 001360 001361 GGCTACCTTG GAGCAGGTGT TCTTAGAACT CTGTAAAGAG CAGGCGCTGG GAAATGTTGA TGA |
Predicted Small Protein
Name | NONHSAT094549_smProtein_68:253 |
Length | 62 |
Molecular weight | 7252.0949 |
Aromaticity | 0.0819672131148 |
Instability index | 68.8721311475 |
Isoelectric point | 4.60919189453 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0359316535787 |
Amino acid sequence | MEPLTFRDVAIEFSPEEWKCLDPAQQNLYRDVMLENYRNLVSLEEGTEPQRKMTCSQQKS Q |
Secondary structure | LLLLLLLEEEEEELLHHHLLLLHHHHHHHHHHHHHHHLLLEELLLLLLLLLLEEELLLLL L |
PRMN | - |
PiMo | - |