NONHSAT047553
Revision as of 13:56, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047553 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3629 nt |
Genomic location |
chr15-:78575577..78579205 |
Exon number |
1 |
Exons |
78575577..78579205 |
Genome context |
|
Sequence |
000001 tcaactactg atctttttac tAAGGCCCAG GACTTTTTAC CCTCCCATGG TCCCACTGTA TCCCACCTGC CCCCTAGCCC 000080
000081 CTAACTGAGG TCTGCTCCAC TCTGCTGAGG TCTGTGTTTA GGGGTAAAAT TGCTGACCTC AGTTAGGTCT TATGGTGGTT 000160 000161 CTCCTGCCAG AGGTGGTTGG GTTTCATTTT TATTAAAAAA GTGAAAATAG CTGTTGTAAT TAGACCTGTC TTGTTCTTGA 000240 000241 TTAGGTTTAA ACTGGTCTCT CCAAGCTGCA TCTGTCATAA TGAATACATC TTGACACTTT CCTTGGACTG GGAGCACTGG 000320 000321 CCCCATACGG AAAGGCTGCT GGTGCAGGCA GGAGTCTGAA CCTGCCCTTC TCCTCAGATG GCTTCCTTGC CCCGTTGGTT 000400 000401 CTCAATTTCC TCATCTGAGG GGTTGGCTTG CGAAGCCTCT GTAGTGTGGT TCTTTGTTCA TTTTGAGCTT CAGCTCTTTG 000480 000481 CTTGTGAAGG ATTTTATTCT TGGCTTTTGG TGGTGTCAAC ACATTATGGG TTAATGCTAC TATTAAAATT TGTCTCTAAT 000560 000561 GCATGAAGCT ACTTCATTGA AAGAGGAATT TTTGATATAG TATTCATGGT CATTATAAGG ATAGCAGATT TGGTCCAGCT 000640 000641 TATTGGCAGA GTTAATAATA TACTTTCCAC TTCAGTGATT ATACTGTAGA AATTAACATC TCAATTTTGT TTGAAACTTT 000720 000721 CCCATTTCAG ACAACATGCC AATTTGGCTG GCACGCTGAG CGGCCATGCC TCCTGGGTGC TGAACGTTGC ATTCTGTCCT 000800 000801 GATGACACTC ACTTTGTTTC CAGGTACTTA ATGATTCTTA GCAGTTTCTA AAATGCTGGG GAGATGAGAG CAGTCTTCTT 000880 000881 GTATAGATTG CCTTAACATT TAAAGATGTT TGACCCTTTT TTATTCAGTT AGCCTTTCTT TTCTGCAGTT CTTAAAATTT 000960 000961 TTATTTAGTG ATGTTAGTTG ACCTTAGCTG GAACAAAAGT CAACAAGTAA TCCTTTTAAA CAGTAAAACT CTTAGTTTTT 001040 001041 TCATTATAAA TTGAGGCTTC TACCAAAGTG ACTCTAAGGT AGACTTGTGT TCCAATGGTA ACTTAAAATA TGTAAATGTT 001120 001121 TGTAAAATGT TGTTTATAGA TCCCAGTGTT GGTCAGGCCT GGGATGGCCA AGACAGTTGG AAAGCAGGAG ATGGACAACT 001200 001201 TGAAGGCATT GCACAGTGCT TTAGAGGCCT CCTGCGAGCC TTGGTTTTGA AGCTTTAACA GGCCTCCCTC CCATCTGGAA 001280 001281 ATAGGTAGCT GTGTCTGAGA CTCCTGGAGA ACAATTAATA TGAGGGCCAG GCAGATCACA ATTTCAGGAA AATGGCTACC 001360 001361 CTGTGAGGAG AGAAAGCCAC CCAATGATGC TGATACCTGG CCATTTCCTG TACCGAGGCA TGGGGTTGGG GGGTCTGAAG 001440 001441 TTAGAAGAAT GTAAGTCATC AAAGGATTTT TGGTCGAAGT CCTTCCAACT TCAAACCGAT ACTAATGTTC ACTTTTTAAA 001520 001521 ATAGTTCGTC TGACAAAAGT GTAAAAGTTT GGGATGTTGG AACGAGGACT TGTGTTCACA CCTTCTTTGA TCACCAGGAT 001600 001601 CAGGTATGGC ATTATTATTT CATCTTTAGA TAGTCGGGGT TGTTTGACCA TTGTACCAAA GAGATTTTCT TTTCCTGACC 001680 001681 TTGTTGCTTG AGCTGTGGAT ACCAGTAGAT GCCTGGGCCT GAGCTGCTCT ATCTGCTCAG TCATCCATGT AGCCAGAGTT 001760 001761 CCTGTGCAGA GTCTGGGGTG CAGAGGCTGG GATGTGCTGT CAGCCTAGCA ACTCACGAGG CATATCCCCA CATAGGCTGG 001840 001841 AAAACATGGT GTTAGCCCCA CAGCCTTTAA ATGCCGTCTT TGGAAATTGC TGCAGCTGGT GTCTGGGGCC CTCTCCTGGG 001920 001921 GGCTGCTGCG CCATGGCAGG CTCACCAAGG ACCTTCCTCT TCAGGAGATT CCATTGCTTA AACACAATCA TCGCTTGTCA 002000 002001 TTTTTGGGAC TGTCCAAAGA AGAGATGTGA TTTTTTTTTT TTTAATATAG TAGAAGCTGG AAATTCATAC AAGTTTTTTG 002080 002081 GCTTTAGTGT TATTGATAAC TTTTCAGTCT TTAAAAGGAA ACTGTTCTCA CAAGCAACTT TATCTTTGCC AAGGTGAATA 002160 002161 TGTGAAATAG CAAAGGTGTT CTAGTGcaat actgctgagt ctttcatgtg tgctcgtatc ccctgggaac ctggtgaaaa 002240 002241 tgcagatgct gcttcactag gtctggcaga gggcctggga ttctgcattt ctaacaggct tccaggtgag gccaaggctg 002320 002321 ctggtcctaa ccacactgta agGTCTTGGG GAACTGAGCA TAAAAAATAA AATGTCCATG GCAATATAAT ATTGGCtttt 002400 002401 aatatatttt aaatattttt aGATGGTCCT ATAGATTTCT CCTCTTTGAA ATGGAACTTA AAGTTAACTA ACATTGTTCA 002480 002481 TGCTTATTTT TCAACTTAAA TTGTCCCAAC AAAATTGAGG GGGTTCTATC TTGATATTCC ACTTCTGGAT TTAAGCATCT 002560 002561 TACTCAGGGA GTAAGTCCTG GCTAGCTGTG TTTCCTTGTA TGTATGGATC ATTGCGGTGC TGTGTCAGAG GCTGGAGTGA 002640 002641 AAGGCCATCA TGCAGCCCAA TCCCAACACT AAAATCAGAG TAGGGTGACA GGCTTACCAC CCAGAATCAC CTCCTAATAA 002720 002721 TCAGGAAGTT ATTTATGATT AGAGAAACTC CAACCACATC AATTCTGTCT GGGAAGGAGG TGTGAATCAG TTAATTTAAC 002800 002801 ACATAGCAAA TAAAAATCTA TGGTCCACAA TATCATGTTG TCTAGCTCCT GGGGACAGGC AGGCTCCATA GGCCACTAAT 002880 002881 AACAGAGTGA GAATTACTGA CTGTGGGGGG CGGACACAAG GGGTCAGCTG AGGAGCGCAG TTTGTGACTT TCCCTATAGG 002960 002961 CAGTGACCTC GGGGTAGTTG TGGGGCTCTT TCTTCCTGGA AGCATAAATG TTGGTCTCTT ATGGCTTCCG TCTTCCTGGC 003040 003041 ATTAGGTTAC ACTTCAGGAT TCTGACTCTT TGAAAGGGTT GTAGATAGTC TTGATTAGTA CTGtatttaa aaatgatttt 003120 003121 tttttttttt tttGGAGTAT GGGAAGGGGC AGGAATTCTA ATTAAATAGC AATAATGGAA GGTGCTCGGT TAAAGCCTCC 003200 003201 ATTCTCACTG ATTTAGAAAG TACAAGAACA TCCTCATCTC AGTTTTGGTA GATTCAGAAT AACGAGAAAA TAAGGATGTT 003280 003281 CATTTCATAA ATATTATAAA GAATAAAGGC ATTTGTAGAA CTATCTTTTT TTAAATTTAC AGGTCTGGGG AGTAAAATAC 003360 003361 AATGGAAATG GTTCAAAAAT TGTGTCTGTT GGAGATGACC AGGAAATTCA CATCTATGAT TGTCCAATTT AAACATCAAA 003440 003441 GTCTCCAGGC TTATGCTGCA AAGAGAATGT ACGGATTGAT CATGACATTC CTTACCTTCT TAGGCTTGTT TAAAAGAAAT 003520 003521 ATAGCATTTA TTGTAGCAAA GACTTAAATT TTGTAGATAC AATATGAATC TTTTCATGTT TTATTGGAAA TGCTGTTCAT 003600 003601 ACTTTAACAT AAAGCTTTCT TAATGCAAA |
Predicted Small Protein
Name | NONHSAT047553_smProtein_377:565 |
Length | 63 |
Molecular weight | 7067.188 |
Aromaticity | 0.193548387097 |
Instability index | 61.6340322581 |
Isoelectric point | 5.38568115234 |
Runs | 12 |
Runs residual | 0.0399078341014 |
Runs probability | 0.0333053641878 |
Amino acid sequence | MASLPRWFSISSSEGLACEASVVWFFVHFELQLFACEGFYSWLLVVSTHYGLMLLLKFVS NA |
Secondary structure | LLLLLLEEEELLLLLHHHLLEEEEEEHHHHHHHHHHHLLHHHEEEHHHHHHHHHHHHHHH LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL LL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiii ii |