NONHSAT047553

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT047553

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3629 nt

Genomic location

chr15-:78575577..78579205

Exon number

1

Exons

78575577..78579205

Genome context

Sequence
000001 tcaactactg atctttttac tAAGGCCCAG GACTTTTTAC CCTCCCATGG TCCCACTGTA TCCCACCTGC CCCCTAGCCC 000080
000081 CTAACTGAGG TCTGCTCCAC TCTGCTGAGG TCTGTGTTTA GGGGTAAAAT TGCTGACCTC AGTTAGGTCT TATGGTGGTT 000160
000161 CTCCTGCCAG AGGTGGTTGG GTTTCATTTT TATTAAAAAA GTGAAAATAG CTGTTGTAAT TAGACCTGTC TTGTTCTTGA 000240
000241 TTAGGTTTAA ACTGGTCTCT CCAAGCTGCA TCTGTCATAA TGAATACATC TTGACACTTT CCTTGGACTG GGAGCACTGG 000320
000321 CCCCATACGG AAAGGCTGCT GGTGCAGGCA GGAGTCTGAA CCTGCCCTTC TCCTCAGATG GCTTCCTTGC CCCGTTGGTT 000400
000401 CTCAATTTCC TCATCTGAGG GGTTGGCTTG CGAAGCCTCT GTAGTGTGGT TCTTTGTTCA TTTTGAGCTT CAGCTCTTTG 000480
000481 CTTGTGAAGG ATTTTATTCT TGGCTTTTGG TGGTGTCAAC ACATTATGGG TTAATGCTAC TATTAAAATT TGTCTCTAAT 000560
000561 GCATGAAGCT ACTTCATTGA AAGAGGAATT TTTGATATAG TATTCATGGT CATTATAAGG ATAGCAGATT TGGTCCAGCT 000640
000641 TATTGGCAGA GTTAATAATA TACTTTCCAC TTCAGTGATT ATACTGTAGA AATTAACATC TCAATTTTGT TTGAAACTTT 000720
000721 CCCATTTCAG ACAACATGCC AATTTGGCTG GCACGCTGAG CGGCCATGCC TCCTGGGTGC TGAACGTTGC ATTCTGTCCT 000800
000801 GATGACACTC ACTTTGTTTC CAGGTACTTA ATGATTCTTA GCAGTTTCTA AAATGCTGGG GAGATGAGAG CAGTCTTCTT 000880
000881 GTATAGATTG CCTTAACATT TAAAGATGTT TGACCCTTTT TTATTCAGTT AGCCTTTCTT TTCTGCAGTT CTTAAAATTT 000960
000961 TTATTTAGTG ATGTTAGTTG ACCTTAGCTG GAACAAAAGT CAACAAGTAA TCCTTTTAAA CAGTAAAACT CTTAGTTTTT 001040
001041 TCATTATAAA TTGAGGCTTC TACCAAAGTG ACTCTAAGGT AGACTTGTGT TCCAATGGTA ACTTAAAATA TGTAAATGTT 001120
001121 TGTAAAATGT TGTTTATAGA TCCCAGTGTT GGTCAGGCCT GGGATGGCCA AGACAGTTGG AAAGCAGGAG ATGGACAACT 001200
001201 TGAAGGCATT GCACAGTGCT TTAGAGGCCT CCTGCGAGCC TTGGTTTTGA AGCTTTAACA GGCCTCCCTC CCATCTGGAA 001280
001281 ATAGGTAGCT GTGTCTGAGA CTCCTGGAGA ACAATTAATA TGAGGGCCAG GCAGATCACA ATTTCAGGAA AATGGCTACC 001360
001361 CTGTGAGGAG AGAAAGCCAC CCAATGATGC TGATACCTGG CCATTTCCTG TACCGAGGCA TGGGGTTGGG GGGTCTGAAG 001440
001441 TTAGAAGAAT GTAAGTCATC AAAGGATTTT TGGTCGAAGT CCTTCCAACT TCAAACCGAT ACTAATGTTC ACTTTTTAAA 001520
001521 ATAGTTCGTC TGACAAAAGT GTAAAAGTTT GGGATGTTGG AACGAGGACT TGTGTTCACA CCTTCTTTGA TCACCAGGAT 001600
001601 CAGGTATGGC ATTATTATTT CATCTTTAGA TAGTCGGGGT TGTTTGACCA TTGTACCAAA GAGATTTTCT TTTCCTGACC 001680
001681 TTGTTGCTTG AGCTGTGGAT ACCAGTAGAT GCCTGGGCCT GAGCTGCTCT ATCTGCTCAG TCATCCATGT AGCCAGAGTT 001760
001761 CCTGTGCAGA GTCTGGGGTG CAGAGGCTGG GATGTGCTGT CAGCCTAGCA ACTCACGAGG CATATCCCCA CATAGGCTGG 001840
001841 AAAACATGGT GTTAGCCCCA CAGCCTTTAA ATGCCGTCTT TGGAAATTGC TGCAGCTGGT GTCTGGGGCC CTCTCCTGGG 001920
001921 GGCTGCTGCG CCATGGCAGG CTCACCAAGG ACCTTCCTCT TCAGGAGATT CCATTGCTTA AACACAATCA TCGCTTGTCA 002000
002001 TTTTTGGGAC TGTCCAAAGA AGAGATGTGA TTTTTTTTTT TTTAATATAG TAGAAGCTGG AAATTCATAC AAGTTTTTTG 002080
002081 GCTTTAGTGT TATTGATAAC TTTTCAGTCT TTAAAAGGAA ACTGTTCTCA CAAGCAACTT TATCTTTGCC AAGGTGAATA 002160
002161 TGTGAAATAG CAAAGGTGTT CTAGTGcaat actgctgagt ctttcatgtg tgctcgtatc ccctgggaac ctggtgaaaa 002240
002241 tgcagatgct gcttcactag gtctggcaga gggcctggga ttctgcattt ctaacaggct tccaggtgag gccaaggctg 002320
002321 ctggtcctaa ccacactgta agGTCTTGGG GAACTGAGCA TAAAAAATAA AATGTCCATG GCAATATAAT ATTGGCtttt 002400
002401 aatatatttt aaatattttt aGATGGTCCT ATAGATTTCT CCTCTTTGAA ATGGAACTTA AAGTTAACTA ACATTGTTCA 002480
002481 TGCTTATTTT TCAACTTAAA TTGTCCCAAC AAAATTGAGG GGGTTCTATC TTGATATTCC ACTTCTGGAT TTAAGCATCT 002560
002561 TACTCAGGGA GTAAGTCCTG GCTAGCTGTG TTTCCTTGTA TGTATGGATC ATTGCGGTGC TGTGTCAGAG GCTGGAGTGA 002640
002641 AAGGCCATCA TGCAGCCCAA TCCCAACACT AAAATCAGAG TAGGGTGACA GGCTTACCAC CCAGAATCAC CTCCTAATAA 002720
002721 TCAGGAAGTT ATTTATGATT AGAGAAACTC CAACCACATC AATTCTGTCT GGGAAGGAGG TGTGAATCAG TTAATTTAAC 002800
002801 ACATAGCAAA TAAAAATCTA TGGTCCACAA TATCATGTTG TCTAGCTCCT GGGGACAGGC AGGCTCCATA GGCCACTAAT 002880
002881 AACAGAGTGA GAATTACTGA CTGTGGGGGG CGGACACAAG GGGTCAGCTG AGGAGCGCAG TTTGTGACTT TCCCTATAGG 002960
002961 CAGTGACCTC GGGGTAGTTG TGGGGCTCTT TCTTCCTGGA AGCATAAATG TTGGTCTCTT ATGGCTTCCG TCTTCCTGGC 003040
003041 ATTAGGTTAC ACTTCAGGAT TCTGACTCTT TGAAAGGGTT GTAGATAGTC TTGATTAGTA CTGtatttaa aaatgatttt 003120
003121 tttttttttt tttGGAGTAT GGGAAGGGGC AGGAATTCTA ATTAAATAGC AATAATGGAA GGTGCTCGGT TAAAGCCTCC 003200
003201 ATTCTCACTG ATTTAGAAAG TACAAGAACA TCCTCATCTC AGTTTTGGTA GATTCAGAAT AACGAGAAAA TAAGGATGTT 003280
003281 CATTTCATAA ATATTATAAA GAATAAAGGC ATTTGTAGAA CTATCTTTTT TTAAATTTAC AGGTCTGGGG AGTAAAATAC 003360
003361 AATGGAAATG GTTCAAAAAT TGTGTCTGTT GGAGATGACC AGGAAATTCA CATCTATGAT TGTCCAATTT AAACATCAAA 003440
003441 GTCTCCAGGC TTATGCTGCA AAGAGAATGT ACGGATTGAT CATGACATTC CTTACCTTCT TAGGCTTGTT TAAAAGAAAT 003520
003521 ATAGCATTTA TTGTAGCAAA GACTTAAATT TTGTAGATAC AATATGAATC TTTTCATGTT TTATTGGAAA TGCTGTTCAT 003600
003601 ACTTTAACAT AAAGCTTTCT TAATGCAAA
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Predicted Small Protein

Name NONHSAT047553_smProtein_377:565
Length 63
Molecular weight 7067.188
Aromaticity 0.193548387097
Instability index 61.6340322581
Isoelectric point 5.38568115234
Runs 12
Runs residual 0.0399078341014
Runs probability 0.0333053641878
Amino acid sequence MASLPRWFSISSSEGLACEASVVWFFVHFELQLFACEGFYSWLLVVSTHYGLMLLLKFVS
NA
Secondary structure LLLLLLEEEELLLLLHHHLLEEEEEEHHHHHHHHHHHLLHHHEEEHHHHHHHHHHHHHHH
LL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL
LL
PiMo ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiii
ii