ENST00000588220.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000588220.1

Source

Gencode19

Same with

NONHSAT068896

Classification

intergenic

Length

616 nt

Genomic location

chr2-:6778924..6790379

Exon number

4

Exons

6778924..6778999,6779183..6779409,6789343..6789513,6790238..6790379

Genome context

Sequence
000001 TTGACAGTTT GGCTTCCCTG TTCTGGGTGG CAAAGCCTGT GGAGTACTCA CCTACCTGCT GCATGAAGGC AGCATGGAGG 000080
000081 GACTGTGGTG GATTATCTGC AAAGATGGCC AAAATTCTCT CATCCCTGCA GGCACATACA AGATGCCAGA ATCAGTCAAA 000160
000161 ACTAAGCTCA CTGTCCTTGC TAATATTCTG CCCCAGAGAA GAACTGAAGC TCAGCTCTTC ACCCTACAGA AAGCCTGAAT 000240
000241 TTTGTAAATG TTCTGCTTAG AATGAGGAAG AAAGATGAAG AATGAGGAGG AAGAAGGAAG GAACGAGAGA GAGCCAGGTT 000320
000321 TCCAGAAGTT CCCCAGTCAT TGAGCATTTC TGAGGCTCTT GATGCATATG CCAAGTAGTT ATGGAGAAAG ACACAGCAGC 000400
000401 TTACCTCTGC AGGCATCATT GTGTGAAAGG AAGACCCAGG CTCTCTCACC ACCCTTGAAC AGAAGCCTTT TGCTAAGGTG 000480
000481 ATAGCTACAT GTCCAAGCCT ATTGCGTGGC ATGCATTTTG CCTTCTGCAG CCCACTAAAG GAAATTGAAG TATACAGAAT 000560
000561 GCTTATTTGG TCTACTCAGT ATCATCCTAA ATGTATGTAC CAATGCTTAG GAGTTT
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Predicted Small Protein

Name ENST00000588220.1_smProtein_62:259
Length 66
Molecular weight 7235.4637
Aromaticity 0.0615384615385
Instability index 47.7292307692
Isoelectric point 9.54876708984
Runs 11
Runs residual 0.0189423076923
Runs probability 0.030070177129
Amino acid sequence MKAAWRDCGGLSAKMAKILSSLQAHTRCQNQSKLSSLSLLIFCPREELKLSSSPYRKPEF
CKCSA
Secondary structure LHHHHHHHLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLEEEELLHHHLLLLLLLLLLLLL
EELLL
PRMN -
PiMo -