ENST00000518837.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000518837.1

Source

Gencode19

Same with

lnc-PANK3-4:1,NONHSAT104978

Classification

intronic(AS)

Length

489 nt

Genomic location

chr5-:167392192..167394091

Exon number

2

Exons

167392192..167392583,167393995..167394091

Genome context

Sequence
000001 GTTTCCAAGG AAGACTAAGA AAACTGCAAA ATTAAAGTGC ACTGCAACAT GAAATGCTGC TGGTGGCCAG GCGAGATCGT 000080
000081 GGTGTCAAAA AGGCAAGATG GAATCTCACG CTATCACCCA GGATGGAGCG CAGGGGTGTG ATCATAGCTT ACTGCAGCCT 000160
000161 CCACATCCTG GGCTCAAGAG ATTCTTCCAT CTCAACCTCC CAGATTACTG GGATTATAGG TATGAACCAC TGCATCTGGC 000240
000241 CTGGAGAGAC ATTTTTTAAA GAGAAAAATC AATTGCTGAG GGCTTTGGAT ATACTACATA TGCTATTATC TGTAAATGGA 000320
000321 TGATTTTCTG TGTTATACAT ATTATTTTAG AATCAAAATA AGTCTGGCCA ATAACTGCAC TCAATTCTCT TGCCTCATAA 000400
000401 ATGTAACATG TCCAAAACTG AACTTTTGTT TTCTGCCACA AAAACCTGTT CCTTCTTCAG CACATGACAT TGCTATTCAC 000480
000481 CCAGACATC
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Predicted Small Protein

Name ENST00000518837.1_smProtein_53:322
Length 90
Molecular weight 10105.8458
Aromaticity 0.0561797752809
Instability index 46.0853932584
Isoelectric point 10.4955444336
Runs 15
Runs residual 0.0253359770875
Runs probability 0.0326620738386
Amino acid sequence MLLVARRDRGVKKARWNLTLSPRMERRGVIIAYCSLHILGSRDSSISTSQITGIIGMNHC
IWPGETFFKEKNQLLRALDILHMLLSVNG
Secondary structure LEEEEEELLLLHHHHEELLLLLLEELLLEEEEEEEEEEELLLLLLLLHHHHEEEELLLLL
LLLLLLHHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -