ENST00000567108.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000567108.1

Source

Gencode19

Same with

lnc-NSMCE1-1:1,NONHSAT141432

Classification

antisense

Length

1684 nt

Genomic location

chr16-:27224631..27226314

Exon number

1

Exons

27224631..27226314

Genome context

Sequence
000001 TTTGCTGATG AACTCGTTGA CCGTCATGAG GGTCTGGGAC CATTCCTCAT CTGTGTACCT CGAACCAACT TCCACTGGGA 000080
000081 CAGTTCGGCA GCCAGCGATC TCCTGGATAT ACTCCAAACT AGCAGAAAGA CACACATTGG CATCGTCACT GCTAATATCT 000160
000161 GTTGGGCATA GTACTAAGTG TGCTTTGCAT GTGGTCCCCT TTCATCCTCG GAAAACCTCA CGTGCAGAGA CAAGGACTGT 000240
000241 CATCCCCAGC TTCACTGATG AGGAACCGGC ATGGAGAGGT GGGGCTCCCT GCTCAAGGCT GTGTGGCTCA TACACAGTGC 000320
000321 TGTGCAGCTT TGCAGACAGG GCCGGTAAGT CTGGTTGGCT GGGCTGCTCT AGTTCCCTGC TTGCCAACAG CCTCCTCACT 000400
000401 TCTTTCTTTG CTCATTTTGT CACTAAGCTG AGAAACCTTT GAACAAATAG CGGACAGCGT GGCAGGTGGC AGTCTCCTGG 000480
000481 ACTCTGCCCT CTAGCCTGGG ACTGATTCCA GGCCTCATCA GTTACAGGCC AGGGGATCTG AGGCAGGTTA CTGAACCCGA 000560
000561 GTCCTTGATC CCCATTTACA GAATGGGGGT GATGACAACA CCTGTCCTAG TGCCAGGTAC GTAGTAAAAT GCTTAATGAA 000640
000641 GCCTTGCTGT GAGGAGAGCT CCTGCAATGA GAATTCCTCC ACATGTGTCA GCGGGTACCA TTCCCTCCGC GAAACCACAA 000720
000721 AACAGGCGGA CTCCATCTAC CTTCCTGGAG AGATGCCTCC TTATTTCCAA ACTCATGCAG AGCCGCGGCA TGACAGCCAC 000800
000801 GCTCCAGCTG CCTGATCTGA TCTCCCCATC ATGATTCTGA GAAAGGACTA GAAACAAACA CAAGAGACCA CAGAATCCCT 000880
000881 CAGAGAGAGA GGGGCTGTCT CTTGGGTTAT TTCTGCTCTT AGCTTCAGGG CCCTGAGATG GTCTGAAATT GCTAGGATCC 000960
000961 TGTAAAATTG CATAACAGAA ACATTCTAGG ACTGCCACTT AGGGACTCAT TAAAAAACCG CTTAAGGCGA GCAAGGTAGA 001040
001041 AGGTAAGAAT CCCATAACCT GCGGCATAAA TTCAGAGCAC CTTACTTTTC ACTCTTTTTT AACCCCTTGG CAATCAGTCA 001120
001121 AGGGCTGCTA GTGAAGCATC TACAAGGTTG CATTTCCCTG GGGATGGTCG GGAGGAATTC AGGGAGCCCT GGGGAACGCT 001200
001201 AAAATGGGAA AAGGGACCTC ACCTCCCTCA GCGACCACCC ACCTCCACTT CTGCATGCAC GGCCAGTGGT CAGCCACGCC 001280
001281 TTTCAGGATC ACGGGCCTCC CTGGAACCAA AAACTGCTCC CTGAAATGCT GGAGGGACGG ACGGTGCAGC CGGGGGACTG 001360
001361 TTTTTTCTAA CTTCACATCT GGAATCAAAC CATGGTCCGC CCTTGCTTTC TGTTTAAAAT CAAAACAGAA CAAAATAGCA 001440
001441 ACCACCTCAG GAAGTCGACA TTTGAGGTAT TCCACCAGGA ACCTGTGTCA GGGGTAGGAG AGCTTAGCTG TCAAGAGTAC 001520
001521 CAGTAACAAC AATAGACAAC GTTTGTTATT ATTACTGCTA CTATTACTAT TTGCTCCTCA TGAGATCAAG GTGGTTTTTT 001600
001601 TCTTAACCAT TTCATCAAAA ATGTTTGTTT CATTATAAAC TGCTTTCACA GACATTCTGC AATAAAGGAA AACTTACTAT 001680
001681 CTCC
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Predicted Small Protein

Name ENST00000567108.1_smProtein_188:430
Length 81
Molecular weight 8331.7634
Aromaticity 0.0375
Instability index 45.70375
Isoelectric point 8.96783447266
Runs 10
Runs residual 0.0138157894737
Runs probability 0.0580462815757
Amino acid sequence MWSPFILGKPHVQRQGLSSPASLMRNRHGEVGLPAQGCVAHTQCCAALQTGPVSLVGWAA
LVPCLPTASSLLSLLILSLS
Secondary structure LLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHLLLLEEEEHHH
HLLLLLLHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH
HHHHHHHHHHHHHHLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTT
TTTTTTTTTTTTTToooooo