NONHSAT108301
Revision as of 09:26, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108301 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
4732 nt |
Genomic location |
chr6+:26630055..26634786 |
Exon number |
1 |
Exons |
26630055..26634786 |
Genome context |
|
Sequence |
000001 TATTTTGCAA AATTAGTACA ATCATACAAC CTGGATATTG ACAATGATAC AGCCAAGCTA CAGAACATTT CTATCACCCC 000080
000081 ATGGATACAT CATGTATCCT TGGATAACTA CACCTACCTC ACTCCCCAAC CCTTATACAT GACAACCACT AAGCTGTTCA 000160 000161 TTTCTATAAT TTATCATTTT AAGAATGTTA TAAATGGAAT CATACAGTAT ATAAACTTTA GTATTGGCTT TTTTCACTCA 000240 000241 GAACAATTAT TTTAATTTTC TTACTAGTAG ATATTATTTT CCTGCTTGAG GAATTATGAT TTATTTTTCT AAGGACAAGA 000320 000321 CAATATGGAT GATCAGGGTT TTTTTGTTTG TTTTTTTGAG ATGGAGTTTT GCTCTTGTTG CCCAGGCTGG AGTGCAATGG 000400 000401 AGTGATCTCG GCTCACCGCA ACCTCTGCCT CCCGGGTTCA AGCGATTCTC CTGCCTCAGC CTCCCAAGTA GCTGGGATTA 000480 000481 CAGGCATGCG CCACCATGCC CACCTAATTT TATATTCTTA GTAGGGATGG GGTTTCTCCA TGTTGGTCAG GCTGGCCTTG 000560 000561 AATTCCTGAC CTCAGGTGAT CCGCCCACCT CGGCCTCTCA AAGTGCTGGA TTATAGGTTT GAGCCACTGT GTCTGGCCTG 000640 000641 GATGATCAGG TTTTATTCTT TATTAGTTGA GATAATTATA TTTGTAATTG AATTATGATT ATTGAACTGC ATTCTTTTTG 000720 000721 GTTGTTGATT TCTCATTTTC TCAAAGCAGA TGCCCAAAAT CTGTGGAGGT GGTTGTCATT GCAAAGAAGT ACCACAGGGC 000800 000801 TTAAAAAGGC AAAGTTCACC CCAATGAACT TCTTAGTATT CAAAAACAGG TTCAGTTTTT GAAAAATAAC CTAGACTGAA 000880 000881 GGAAACAATC ATATCAAGCC CACAGGAAAA AATGAAGCAC AGGGTCAAAA TGATCGTCTC TTTAGTTGCT TTCATCCCAG 000960 000961 GGCTTTTTTT TCTTGGAGAT GGAGTTTCAC TCCTGTTACC CAGGCTGGAG TGCAATGGTG CGATCTCGGC TCACTGCAAC 001040 001041 CTTTGCCTCC CGGGTTCAAG TGATTATCCT GCCTCAGCCT CCCGAGTAGC TGGGATACAG GCATGCACCA CCACGCCCAG 001120 001121 CTAATTTTGT ATTTTTAGTA GAGATGGGGT TTCTCCATGT TGGTCAGGTT GGTCTCGAAC TCTCAACCTC AGGTGATCCG 001200 001201 CCTGCCTCAG CCTCCCAAAG TGCTGGGATT ACAGGCCTGA ACCACCGCGC CCGGCCCCAG GGTTCATTTT GAATTAGGGG 001280 001281 CCCGACCTGT GAAGGTGCTG TATTTGCTCG TGATGTCTGT AGAGGGGATG CATCCTATAC CCACTCGTCC AGCACATAAA 001360 001361 ACCCAGGAGG GGAAACGTCA TGAATGTGAA ATGCCATGAA CGTGAGAAAG AATCACCTAA TAAAATTATC CGTTAGCAAA 001440 001441 ACAGAGCAAG ATTTCACAAT GTATCTGGAT ACAGTCTCAT TCTTGAGGGC TGTAATTGAG ATAAAATTAA GTTGGAAAAT 001520 001521 ATGAGTAAAT TAAATTAAGA ATTCAAACAA AAAGGAGTAA AGGGCACACA ATGGTTTTCT GGTTTTGAGC ACTGATCAAT 001600 001601 AGGGGTTACA AAGGCCAATG ATGATGGCAT AAAGAATGCT TAAGTGGCTT GTCTAACAGA TGGAAAGGCC ACGTGACACT 001680 001681 GTGTAGCTAT TTGTCTTAAA AATAACATAA TGTATGAGAG TTCTCAAGAC CAAAGCTTAA GAATCCTTGG GGATTCCTAT 001760 001761 AATACAAGCC ACTAACATGT GGACCAATGA GAAGTGGGTT ATTAGTAGGC ATATGGGCCT CTGCTTGAGA CTCACAATGA 001840 001841 AAATATGAGC ATAGCTCACA AAGAGAATGG CATTCCCCAT GACATCAAGT CTAGCTTAGA AAAGAAAAGC GGGCAGGTGC 001920 001921 AGTGGCTTAG TTCTGTAATC CCAGCACTTT GGAAGGCTGA GGTGGGCAGA TCACTTCAGC TTGGGCTCAG GAGTTCAAGT 002000 002001 CCAGCTGGAC AACATAGTGA AAACCCCATC TCTACAAAAA TTAGCTGGGT GTGGTGACTT GTCCCTGTAG TCCCAGCTAC 002080 002081 TCAGGAGGCT GAGGTGGGAG AATGGCTGGA GCCTAGGAGG TGAAAGTTGC AGTAAGCAGA GACTGCACCA CGGTACTCCA 002160 002161 GCCTGGGCAA CAGACACACA CCTTGTCTCA AAAAATAAAT ACAATAAATA AAATAAAATA AAACAATTGC CAGGATGCCA 002240 002241 TGTGTTGAAA TCAATCCAAC ACTTTATAAG CTGCGTAACT GCAGGATCAA CTTCTATAAC CTGTTTTTTA AAATTCTGCA 002320 002321 ATTTAGTGAT TATTACCTGT GAGGACTAAA CTCCAGTTTT TTATCCTGCC TAAATTCCTA TCTAAGGGGT TTGGAGAGTC 002400 002401 ATGCCCTGAA AATCATAAAT TCTCATCAGA TGGGTTTTAT TTAACCCTAT AGATTGTGAC TTACTTTCCA AACTGACTCT 002480 002481 GCTGTATGGT TAACTTCTAG GTTTTTATTT GGTGGAGAAG ATTGCTCTTG TCACTTTGGA GTCTCATGCA TTTGAGTTCA 002560 002561 ATTGGAACTG AGCTAAGTGT GTATGTTACA ATGGCATTTG TATTATTTAG CAGCATTTGC AGCCCACCTC CATTTCCTAA 002640 002641 ATCCATTTGT CACACTCTTA GACTGGTCTG TGTTCTTGCA TCTGGGAAAG GAGATAGCAG AAAGTAGCAA AATGGGTACT 002720 002721 GGGTTTTTTG TTTGTTTGTT TGTTTGTTTT TTGTAGCTCT TGAGTTTCAG AAGCAGAACC TATTACAGCA ATGAAGGGGC 002800 002801 CACAAAGTCA GTACTCTAAG GGAAAACAAT CATACAACTC AATCTTTATG CCATTTGGCT TGAGTTTTTT TGTTTTTTTT 002880 002881 TTTCCAGATA GGGTCTGGCT CTGTCACCCA GGCTGGAGAG CAGTGGCACA ATCTCAGCTT TCTGCAGCCT CTACCTCCTG 002960 002961 GGCACAAGCG ATCCTGCCAC CTCAGCCTCC AGAGTAGCTA GGACTACAGG TGGGCACTAC CATGCCTGGC TAATTTTTGT 003040 003041 AGAGACAGGG TCTTGCCAGT CTGGTCTCTA ACTCCTGAGC TCAAGCAATC CGCCTGCCTC CACTTCCCAA AGTACTGGGT 003120 003121 TACAGGTATA AGCCACCGTG TTTGGCTTCA TTCTGCTTGA GTCTAAGTGT CTAAGTGTTT GCATCAAGTG TCTTAGATAC 003200 003201 ATAAATGCCA CCACTTAAAA ATCTTAATTA TTTTTTCCTG CTTTTCCTAG TAACTGTCCT GTCTAGGGGA CTACCTTTTT 003280 003281 TATTAGCTTT TTCAAAGAAT AATAAGGTGT TGGTTTTACT GATTCTCTGC ATTATCTTTT TGTTATTTTC TATTAACTTT 003360 003361 CCTGTCTAGG GGACTATCTT TTTTATTAGC TTTTTCAAAG AATAAGGTGT TGGCCAGGAT GGTCTCCATC TCTTGACCTC 003440 003441 GTGATCCACC CGCCTCAGCC TCCCAAAGTG CTGGGATTAC AGGCGTGAGC CACTGCGTCT GGCCTACCCC AACTTTTTAA 003520 003521 GTTTCCTTTG CCAGATGGAA GGATTCCCTC TGCAAGTGTT AACTGCTTTC AGCTTCTCTC ACTCATTTAA AATCCAAATC 003600 003601 CCTGCCTGGG GAAAGTGATG ACACAAGCTG ATGTTTCAGG GACAAAGAAG CTTCAATTGC ACTATGAGTT TCTTTTCTCA 003680 003681 ATAAACAATG TAAAGACCAT TTCAAGAAAC ACTTGCGGTG TGTGCGCTGG ATAGCACTTT TCCCTGTCTA CTTCACCAGA 003760 003761 GACACTGAAG CACACATCAT TTCTCTTTCA GTTACTTCTG GGGGTCACGG TTATTATTTT TCCCAGAAAT ATTTCTCACA 003840 003841 ACAGTCCACT TCAATGTTGG GAGTAGTATC ACTTTAAGTT AGAAAAATAA GCATGAAGGC TGCAAGTCTT GTTCTACCTA 003920 003921 CACAACTCTA TATGAATCTC AGGAGGAAAA AACAAACTTA AAGCTGTACC TTTTCCCTTC CCTGTTTCAT CCACATCATA 004000 004001 CCTCCTTCTT ATCCTCTTCT CACAATGAAA GCCACTTAAA ACTCTGGCAT CTACTCTGTT GGTAGAGCAG ACAGACATAA 004080 004081 ACTAGGACAA ACTTTATAAT GGTGGGTAAA TTAGAGCAAC TATTTTTATA CCATCTCCAT CCCACTCTAA TTCAACAAAT 004160 004161 AAGACCAAGA GGGAAGAATT GGAACCAAAT GTGGATTTCA CTAGGAATTA TAAATGTAAA ATCTTCCCTA ATTTTGAGGG 004240 004241 GGTCACTCAC ACAAAAAAAC CATAGATGGT TTTGCTGCTA ATGAATTTCA GCAGGGCCTC AAACATGGTC AGTTCAAACT 004320 004321 ATTAGCCCCA TTTATGGAAT GTGGTGCAGA GGTTCCAAAA GGATGCAATG TCCACAGCGG AGCATAGACA ATATTCCTTC 004400 004401 TGTTCCTCTC TGCCTCGGCA TCCAAAATTG CTGGAATTAT AGAGATGGTC CAGTGGTTAT CTCTACCTCC ATGTCTAAGT 004480 004481 ATCACATTAT TAACCACTTC ATTCTAATCC AAGTGTAGAG GAAATGCTGT TTCTCTCAGT ACAGTGGAGA CGGAAATGGA 004560 004561 GTTTTTCAGA ACAAATGTTT ATTTAATAAT TAAGGGCAAA CAAAAACATT AAAGCATAGG AATACATCAA CTGAATACAA 004640 004641 GTTGTCTTGT TTGGTCTGAA ATCTTGAAAA AGTTAATCTA ACTACTTACC TGAGGTAGAT TTAGGTTGGC ACTGCTTCAA 004720 004721 GGGAACCTCC GT |
Predicted Small Protein
Name | NONHSAT108301_smProtein_1844:2056 |
Length | 71 |
Molecular weight | 7704.6923 |
Aromaticity | 0.0571428571429 |
Instability index | 58.4271428571 |
Isoelectric point | 9.69659423828 |
Runs | 8 |
Runs residual | 0.0305516265912 |
Runs probability | 0.0434552199258 |
Amino acid sequence | MSIAHKENGIPHDIKSSLEKKSGQVQWLSSVIPALWKAEVGRSLQLGLRSSSPAGQHSEN PISTKISWVW |
Secondary structure | LLLLLLLLLLLLLLHHHHHHLLLLEEEHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LLEEEEEEEL |
PRMN | - |
PiMo | - |