NONHSAT018827
Revision as of 09:57, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018827 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3673 nt |
Genomic location |
chr11-:36505323..36508995 |
Exon number |
1 |
Exons |
36505323..36508995 |
Genome context |
|
Sequence |
000001 ATTTTGTCAT AAACCAGCCA GTTATTTTAT GCTGGTCATT CATCTTGACT ACAAAGTAGA ATAGTCAAGC TGTCATTCCA 000080
000081 AATAGAAAAC TTTTTACTTC AATCAGAATT AAGCCTTAAC CTGGAAAGTT GGTTTCTTCC TTACATTTTC CCAATCTCCT 000160 000161 ACTCTATTCT TAAACATGCT AGTTTCACTC AGTTGGGTAT ACAAGCCTTT GGGCTTTATG TTGTATGTTA CTAACCACCT 000240 000241 TTTACCATAT TTATCTTTTG GCATCATTCT GGGACATTGC TAAATTAAAA AAGAAATTGT TTCCACTTTT TTCTGGAGAT 000320 000321 GTTCAACTAA AGGTTGTTTT GTTTTGTTTT TTGTTTTGAG ACAGTCTCAC CCTGACGCTC AGGCTGGAGT GCAGTGGTGC 000400 000401 AACCTCGGCT CACTGCAACC TCCACCTCCC GGGCTCAAGC CATTCTCCTG CCTCAGCCTC CCAAGCAGCT GGGATTACAG 000480 000481 GCACCCGCCA CCACGCCCAG CTAATTTTTT TGTATTTTGA GTAGAGACCG GGTTTCACCA TATTGGCCAG TCTCGTCTGG 000560 000561 AACTCCTGAC CTCAGATGAT CCGCCCGCCT CAGCCTCCCA AAGTGCTGGG ATTACAGGCA TGAGCCACCA CGCCCAGCGT 000640 000641 CCAACCCACT GTTGGATGAA ACTTGCTGCA CGTCATACAT TTTGCTGTTG GCAAACAAGT CTGAATGTTG ATTTGAAGTT 000720 000721 TGGTAGTTTA TTACTATCTA TTGGCAGCAA AGACTGTTTA TTGGTATACT ACAATATGAT TTAACTTTTA TTTTGGGGAT 000800 000801 AAATAGTAGA AAAAAGTGAA ACAGAATGAA GGCAGGTGTT TTTTATTCTA ATGATGGAAT AATACAGAGA TACTGGACGA 000880 000881 TCTCTAGCAG TTAATTATTG TGACCCATAT AAAATTATAC AGGTCACAGT ATAATTCTCT ATTACCGTTT TTACACCAGT 000960 000961 AAGTCTTAGA TAAACTAAGC ATGCTTATGA ATTATGTATA CAGTTAGAAT GCATTATTTT TACAGAGGAA CAATTGCTTG 001040 001041 TATGTACTAA CACTGTTCTC TTGGCTTGCC TCAAGTTCTA CTCATTATTT TATATAAAAT ACTATTAGGC TGGGCACGGT 001120 001121 GGCTCACGCC TATAATCCCA GCACTTTGGG AGGTGGAGGC TGGCGGATTA CTTGAAGCCA GGAGTTCGAG ACCAGCCTGG 001200 001201 CCAAAATGGT GAAACCCCAT CTCTATAAAA ATACAAAAAT TAGCCAGGTG TCATGATACA TGCCTGTAAT CCCAGCTTCT 001280 001281 TGGGAGGCTG AGGCACGGGA ATCGCTTGAA CCCGGGAAGC ACAGGTTGCA GTGAGCCAAG ATCATGCCAC TGCACCCCCA 001360 001361 GCCTGGGTGA CAGAGTGCAA CACTGTCTCA CAAAACAAAA CAAAAACATC AGATTCTGTT TGTGATGCCT AGTTGCTTAC 001440 001441 AACCTAAACA GTGCAATGCC TTAAGGAAAT GAAAAGGAGC CATAAGTAGT CATTTATATT TTTATTTTGA AGTGTGCTTT 001520 001521 TTCTAAACTC CCAGATTGAC ATGATGGACT GTAAGTTAGT TTCTCTGTTT CTGTCTTTGT GCCTGTAGAG TGTACTTGGC 001600 001601 ACTTACAAAT TCCCAGTATC CAGAAAGATG ATCTGATGAA ATCAAATTGG ATGGATCTTG GCAGACTGTG ACACTCAATT 001680 001681 ACAGCCTTCA CTTTCAGTCA AAAACGGACA CTTGGCAAGG AGGTGCCTGG TTGTTTCACT AAATGTCACT TGTGTGTGTA 001760 001761 ATATTTTAAA GCTTTTTCCC CACAGGAAAT TCGGGTCATA AAATCCTGAA AAATAATTCT AGGTGGGAAA AGCATTTTAG 001840 001841 GAAATGAGAG ATGTGGTGCT GCTTTTCTTC TCTCAGAGTG CTTTCTCAGC AGGACACTAG CCCTGCCTTT AAGATGGGGA 001920 001921 AGTTGGGGCA TGTGCCTCTG CTCTTACTGT CTGCAGCTCT GAAGGTAGGT GCTGTCCCAC TCGGACAATC GCCCAAGCAG 002000 002001 CAGTGACCAT AGTTCTCTTC TATGCAAGTC CCCAGGAGAA GGTAAACTGT GTGGAATGGG GATGTGTTCT GGTTGCTGCT 002080 002081 GAATCCCCTC TTCTTACCAC AGTGCCTGGC ACGTTGCACA CACTCAAATA CGTAATAATG AACATTTATT GAAAGCAGCA 002160 002161 GTTGAAGCTG ACCAATTTCT GGTACCTTGT CATGTAAATT TTAGATGGTA AGGCGCAGAT GTTACTTTTT TTGCTTTTTT 002240 002241 TCTTCAGCAC TTGATGAAAT TTCCCAAACA TGCAGAAATG TTGAAAGACT TGTATAGTGA ACATCTACGA CCTAGAATCT 002320 002321 GCAGTAATAT TATGTTACAT TTGCTTTATC ACTTGATAGA TGTTACTTTT AATGAGACTT CAAGTTTGGT TTCTCTAAAC 002400 002401 AAAATATTCT AAAATAACTG AACAACTTTA ATCAATTTGT CTTAAGTTCT TTGGGGGAAC TTGGGACATT TGCTTTGTAA 002480 002481 CTGGAATTGC AGCCCTCACG TTAAGCTAAT TTTAAACTTT GCAAATTTGT TATGCTGAAT TTCAGTCTTA TTTATTTTGC 002560 002561 CTGAAGGGGT ATTTTTTGTA ATGGATTTAT TTGAAGGTCC TTGATAAATT GTGCAGAATA TTCTCGTGTT CTTTTTGCAC 002640 002641 TTGATAAATT ATCTAATTTC TGTGGTGAGA ATGTAATTTG GGGCCTATTT TGTTTATACA AGCTTCCAGA ATTATGTTCT 002720 002721 CAGAGGGATG AAAAGGTGTA ATTTAGCATA TAGGTCACTA AATTAGGAGC TAAGACACAT TTTCTCCTGA CTGACCATGG 002800 002801 GTCAATCAGT TTTGTCTTCG TGTCCTTTTC CTTGTAAAGT AGAAACTAGA ATTTGAAATT TAAATATTAA ATAATGGGTA 002880 002881 ACATTCATTA ATGTATGACT CTATTAAGAA AGACACTGTG AATCCAGGGA GGATTCTCAT AATTCTGTAA ACTGTATGAC 002960 002961 AAGCTGTGGA ATGAAATCTG ACTTTTGAAA ATTGAAAGAC ATCCAGTGGT CTTATCACAA AGCCTGCTTT TCCTCAGAAC 003040 003041 TTAACTATTG CCATGGAATT TGTAAGCAGT TATCCTAATC CATCTGGACT CTGAAAATGC ATCCTTTATG AGAGGGAGTG 003120 003121 AATGCAAAGA TAAGGGTGGG GAAACACTAA TCATGAAAAG AATGAAAATC AGTGTTCAGT TTTAAGAGCA GGTTGTATTG 003200 003201 AAGGAAGGGA TTAAAGGAAT TATCCAGATT TGAGGTGGCA CATCTTCCAC CACTCCCTGC ACCATCAGCA TGCACGGAGC 003280 003281 GCATAAAACA AGCCCTGCTC CTAATGGCAG TGAAACCTCG GATGGCCTCC ATCAGGTCAA TACAACTGAA TTGCTGGGCT 003360 003361 GACTTAAGAT TGAAGGACTC CATTTTAGTA AGTAGAGAAG TGTGACCTTT CTCAACCCAG GTTGTGAATG TGGATTCACA 003440 003441 CTTATCTCAA AAAGGCACCT GGAGTTTTAA CTTTATGTCA TGTCTCAGTA CTGGTTGCAA GGTATGACCA AAAGTGTTCC 003520 003521 TTGAATGGCA CCTTTTTGAA TATTAATTTA GAAGAAAACA TGCCAGACTG ACATACTTAC CCCCTCCGCA CTGTTACTAC 003600 003601 TTCCTTACCA GCCCTATGTA CTGCATCAAT GTCTACAAGA AAGCACTCTT CATTAAAATG AAATATATAT ATT |
Predicted Small Protein
Name | NONHSAT018827_smProtein_1850:2005 |
Length | 52 |
Molecular weight | 5468.4859 |
Aromaticity | 0.0588235294118 |
Instability index | 64.7843137255 |
Isoelectric point | 9.69793701172 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.039843765334 |
Amino acid sequence | MWCCFSSLRVLSQQDTSPAFKMGKLGHVPLLLLSAALKVGAVPLGQSPKQQ |
Secondary structure | LEEEELLEEEELLLLLLHHHHLLLLLLHHHHHHHHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |