NONHSAT018827

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT018827

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3673 nt

Genomic location

chr11-:36505323..36508995

Exon number

1

Exons

36505323..36508995

Genome context

Sequence
000001 ATTTTGTCAT AAACCAGCCA GTTATTTTAT GCTGGTCATT CATCTTGACT ACAAAGTAGA ATAGTCAAGC TGTCATTCCA 000080
000081 AATAGAAAAC TTTTTACTTC AATCAGAATT AAGCCTTAAC CTGGAAAGTT GGTTTCTTCC TTACATTTTC CCAATCTCCT 000160
000161 ACTCTATTCT TAAACATGCT AGTTTCACTC AGTTGGGTAT ACAAGCCTTT GGGCTTTATG TTGTATGTTA CTAACCACCT 000240
000241 TTTACCATAT TTATCTTTTG GCATCATTCT GGGACATTGC TAAATTAAAA AAGAAATTGT TTCCACTTTT TTCTGGAGAT 000320
000321 GTTCAACTAA AGGTTGTTTT GTTTTGTTTT TTGTTTTGAG ACAGTCTCAC CCTGACGCTC AGGCTGGAGT GCAGTGGTGC 000400
000401 AACCTCGGCT CACTGCAACC TCCACCTCCC GGGCTCAAGC CATTCTCCTG CCTCAGCCTC CCAAGCAGCT GGGATTACAG 000480
000481 GCACCCGCCA CCACGCCCAG CTAATTTTTT TGTATTTTGA GTAGAGACCG GGTTTCACCA TATTGGCCAG TCTCGTCTGG 000560
000561 AACTCCTGAC CTCAGATGAT CCGCCCGCCT CAGCCTCCCA AAGTGCTGGG ATTACAGGCA TGAGCCACCA CGCCCAGCGT 000640
000641 CCAACCCACT GTTGGATGAA ACTTGCTGCA CGTCATACAT TTTGCTGTTG GCAAACAAGT CTGAATGTTG ATTTGAAGTT 000720
000721 TGGTAGTTTA TTACTATCTA TTGGCAGCAA AGACTGTTTA TTGGTATACT ACAATATGAT TTAACTTTTA TTTTGGGGAT 000800
000801 AAATAGTAGA AAAAAGTGAA ACAGAATGAA GGCAGGTGTT TTTTATTCTA ATGATGGAAT AATACAGAGA TACTGGACGA 000880
000881 TCTCTAGCAG TTAATTATTG TGACCCATAT AAAATTATAC AGGTCACAGT ATAATTCTCT ATTACCGTTT TTACACCAGT 000960
000961 AAGTCTTAGA TAAACTAAGC ATGCTTATGA ATTATGTATA CAGTTAGAAT GCATTATTTT TACAGAGGAA CAATTGCTTG 001040
001041 TATGTACTAA CACTGTTCTC TTGGCTTGCC TCAAGTTCTA CTCATTATTT TATATAAAAT ACTATTAGGC TGGGCACGGT 001120
001121 GGCTCACGCC TATAATCCCA GCACTTTGGG AGGTGGAGGC TGGCGGATTA CTTGAAGCCA GGAGTTCGAG ACCAGCCTGG 001200
001201 CCAAAATGGT GAAACCCCAT CTCTATAAAA ATACAAAAAT TAGCCAGGTG TCATGATACA TGCCTGTAAT CCCAGCTTCT 001280
001281 TGGGAGGCTG AGGCACGGGA ATCGCTTGAA CCCGGGAAGC ACAGGTTGCA GTGAGCCAAG ATCATGCCAC TGCACCCCCA 001360
001361 GCCTGGGTGA CAGAGTGCAA CACTGTCTCA CAAAACAAAA CAAAAACATC AGATTCTGTT TGTGATGCCT AGTTGCTTAC 001440
001441 AACCTAAACA GTGCAATGCC TTAAGGAAAT GAAAAGGAGC CATAAGTAGT CATTTATATT TTTATTTTGA AGTGTGCTTT 001520
001521 TTCTAAACTC CCAGATTGAC ATGATGGACT GTAAGTTAGT TTCTCTGTTT CTGTCTTTGT GCCTGTAGAG TGTACTTGGC 001600
001601 ACTTACAAAT TCCCAGTATC CAGAAAGATG ATCTGATGAA ATCAAATTGG ATGGATCTTG GCAGACTGTG ACACTCAATT 001680
001681 ACAGCCTTCA CTTTCAGTCA AAAACGGACA CTTGGCAAGG AGGTGCCTGG TTGTTTCACT AAATGTCACT TGTGTGTGTA 001760
001761 ATATTTTAAA GCTTTTTCCC CACAGGAAAT TCGGGTCATA AAATCCTGAA AAATAATTCT AGGTGGGAAA AGCATTTTAG 001840
001841 GAAATGAGAG ATGTGGTGCT GCTTTTCTTC TCTCAGAGTG CTTTCTCAGC AGGACACTAG CCCTGCCTTT AAGATGGGGA 001920
001921 AGTTGGGGCA TGTGCCTCTG CTCTTACTGT CTGCAGCTCT GAAGGTAGGT GCTGTCCCAC TCGGACAATC GCCCAAGCAG 002000
002001 CAGTGACCAT AGTTCTCTTC TATGCAAGTC CCCAGGAGAA GGTAAACTGT GTGGAATGGG GATGTGTTCT GGTTGCTGCT 002080
002081 GAATCCCCTC TTCTTACCAC AGTGCCTGGC ACGTTGCACA CACTCAAATA CGTAATAATG AACATTTATT GAAAGCAGCA 002160
002161 GTTGAAGCTG ACCAATTTCT GGTACCTTGT CATGTAAATT TTAGATGGTA AGGCGCAGAT GTTACTTTTT TTGCTTTTTT 002240
002241 TCTTCAGCAC TTGATGAAAT TTCCCAAACA TGCAGAAATG TTGAAAGACT TGTATAGTGA ACATCTACGA CCTAGAATCT 002320
002321 GCAGTAATAT TATGTTACAT TTGCTTTATC ACTTGATAGA TGTTACTTTT AATGAGACTT CAAGTTTGGT TTCTCTAAAC 002400
002401 AAAATATTCT AAAATAACTG AACAACTTTA ATCAATTTGT CTTAAGTTCT TTGGGGGAAC TTGGGACATT TGCTTTGTAA 002480
002481 CTGGAATTGC AGCCCTCACG TTAAGCTAAT TTTAAACTTT GCAAATTTGT TATGCTGAAT TTCAGTCTTA TTTATTTTGC 002560
002561 CTGAAGGGGT ATTTTTTGTA ATGGATTTAT TTGAAGGTCC TTGATAAATT GTGCAGAATA TTCTCGTGTT CTTTTTGCAC 002640
002641 TTGATAAATT ATCTAATTTC TGTGGTGAGA ATGTAATTTG GGGCCTATTT TGTTTATACA AGCTTCCAGA ATTATGTTCT 002720
002721 CAGAGGGATG AAAAGGTGTA ATTTAGCATA TAGGTCACTA AATTAGGAGC TAAGACACAT TTTCTCCTGA CTGACCATGG 002800
002801 GTCAATCAGT TTTGTCTTCG TGTCCTTTTC CTTGTAAAGT AGAAACTAGA ATTTGAAATT TAAATATTAA ATAATGGGTA 002880
002881 ACATTCATTA ATGTATGACT CTATTAAGAA AGACACTGTG AATCCAGGGA GGATTCTCAT AATTCTGTAA ACTGTATGAC 002960
002961 AAGCTGTGGA ATGAAATCTG ACTTTTGAAA ATTGAAAGAC ATCCAGTGGT CTTATCACAA AGCCTGCTTT TCCTCAGAAC 003040
003041 TTAACTATTG CCATGGAATT TGTAAGCAGT TATCCTAATC CATCTGGACT CTGAAAATGC ATCCTTTATG AGAGGGAGTG 003120
003121 AATGCAAAGA TAAGGGTGGG GAAACACTAA TCATGAAAAG AATGAAAATC AGTGTTCAGT TTTAAGAGCA GGTTGTATTG 003200
003201 AAGGAAGGGA TTAAAGGAAT TATCCAGATT TGAGGTGGCA CATCTTCCAC CACTCCCTGC ACCATCAGCA TGCACGGAGC 003280
003281 GCATAAAACA AGCCCTGCTC CTAATGGCAG TGAAACCTCG GATGGCCTCC ATCAGGTCAA TACAACTGAA TTGCTGGGCT 003360
003361 GACTTAAGAT TGAAGGACTC CATTTTAGTA AGTAGAGAAG TGTGACCTTT CTCAACCCAG GTTGTGAATG TGGATTCACA 003440
003441 CTTATCTCAA AAAGGCACCT GGAGTTTTAA CTTTATGTCA TGTCTCAGTA CTGGTTGCAA GGTATGACCA AAAGTGTTCC 003520
003521 TTGAATGGCA CCTTTTTGAA TATTAATTTA GAAGAAAACA TGCCAGACTG ACATACTTAC CCCCTCCGCA CTGTTACTAC 003600
003601 TTCCTTACCA GCCCTATGTA CTGCATCAAT GTCTACAAGA AAGCACTCTT CATTAAAATG AAATATATAT ATT
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Predicted Small Protein

Name NONHSAT018827_smProtein_1850:2005
Length 52
Molecular weight 5468.4859
Aromaticity 0.0588235294118
Instability index 64.7843137255
Isoelectric point 9.69793701172
Runs 9
Runs residual 0.0222286934576
Runs probability 0.039843765334
Amino acid sequence MWCCFSSLRVLSQQDTSPAFKMGKLGHVPLLLLSAALKVGAVPLGQSPKQQ
Secondary structure LEEEELLEEEELLLLLLHHHHLLLLLLHHHHHHHHHHHLLLLLLLLLLLLL
PRMN -
PiMo -