NONHSAT081447
Revision as of 10:02, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081447 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
740 nt |
Genomic location |
chr21-:25690377..25718892 |
Exon number |
3 |
Exons |
25690377..25690867,25714891..25714983,25718737..25718892 |
Genome context |
|
Sequence |
000001 TTTTTCAAAC TGTTACACAA AATATATATA GAAGAAGGGG GAGCAATTAC AAGTGCCTTT TATGAGGCAA ATATTAACCA 000080
000081 AATACAAAAG ACAAATAAAT ATACAATCAG AAGAAAAAAA ACAACTACAG GCCAATAACC TCAATGAACA TAGATTGAGG 000160 000161 CATTAGGCTG TTTCCCTCTT TATATCTAGT TTATTAGTAA TCTCTCTCAT AACACTGGGC ATTGCACTGA AACAAATGTA 000240 000241 AAGATCTTAT ACATATTTTG ATGCTACATA TATTTGTGCT TATAAATAAA TGTTTCTCAT TTAAATAGTA CCTATAACTT 000320 000321 GCAGATAAAG TAGATTACTC CTTTTGCTTC AGTTCATGTT TTTATTACTA ATAAATTATA TCCTATATTT TTTCCTCATT 000400 000401 TTGATAAACA TTTGTTTCAC TTTTGAGTGA CATATATTTG GTCATTCTTT GTTTCCAGCA TTTTGTTTAT ATTAGGTTAT 000480 000481 TTAAATAGTG TATAAGAAAT AAATATTTAT AACTTTTTTG ACACAATGTA AATGCTCTTG CCTTTAAAAT ATGAAGTTTG 000560 000561 GACTAGTTGA ATCTATTAAC ATCTCTGCAC CATTTAATGT CTTTTATCGT TTTACTTTCT TCTGCTAGCC ATATAGATAA 000640 000641 TATATTATTT TGCTTGATAT TTTCTTATTC TGTGATATGG AAGATAGACA TTCTTTTTCT ATTCTTATCA TGTATTAAGG 000720 000721 TGTTTCTCAC AAAATAATGA |
Predicted Small Protein
Name | NONHSAT081447_smProtein_596:736 |
Length | 47 |
Molecular weight | 5343.4941 |
Aromaticity | 0.173913043478 |
Instability index | 54.8913043478 |
Isoelectric point | 7.81341552734 |
Runs | 5 |
Runs residual | 0.05266563147 |
Runs probability | 0.0109874580463 |
Amino acid sequence | MSFIVLLSSASHIDNILFCLIFSYSVIWKIDILFLFLSCIKVFLTK |
Secondary structure | LEEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |