NONHSAT013272
Revision as of 10:29, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013272 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2016 nt |
Genomic location |
chr10-:49676050..49687239 |
Exon number |
2 |
Exons |
49676050..49677859,49687086..49687239 |
Genome context |
|
Sequence |
000001 CGGGGAGCCA GGGGCATGCT GGGGAAGAGC ATTCCAGCAG AGACATGGAC ACGTGCGAAG GCCCCGAGGT AGGGACGAGC 000080
000081 TTTGGGAACA CGAGGCATGT CAGGAAGGCC GGGGCCCCGA GGGAGTGAAG ACCAGGCGAG TGGGAGGGCC TGAGCTTGTT 000160 000161 CCAAGTGGCC CTGGAGGACT TCAGCCCACA CACCCTGAGA GAAGAGGAAG GGAGCTCACA CTGGCTATGG GCTGCCCTTG 000240 000241 CCAGGAGTTT GGTACAATCT GGAGGCAGCA GAGACTCAGA GGTTCAGCAA CTTACCTAAC AACACACAGT GGGGCTGGGG 000320 000321 GCAGCGCAGC CCACCTCCAG CGTAAGCTCA TCGCTGGATG CTGTTGCCAG GTAGGCCTCA GCGCATTCTA CCCACTAGAT 000400 000401 CTGAGTTGTC TTGGTCGGGG AGGGGGGCAT AATTAAGACT GAAGGAAGAG GCAGTCCCTA AGGTCCTGGA TCCCAGCCCT 000480 000481 AGCCAGGGAG CTGTTGTACA CACAGCTCAG AGACAAAGAC CATCCAGAGT GAAGAGGCCA ACTGTTAACT GGGTTGCTTG 000560 000561 TGTGATTGGA CAGACTCAGG TTGTCAGCTC CCCAGCCCTG CCCTGAGAAG GCAGTCTCAT GACTGTCTCT GCACTCCCAT 000640 000641 CCCCAACAGG CCCCACAGCT AAAAACCACC CCTGAGGTGG GGTGGGCATT GGCAGGGCCA GGGCTTCACC TGGAGCTCAA 000720 000721 TGTGGCAGTG CCTGCCGGAG CCTTCTAATG GGTGGTGCCT GCAGGCCTCT AGCCATGTGG GGCTCCTGGG TAGGGGTGGA 000800 000801 GGGCACTCTG CAGAGACTGG CCAGTCTGAC TCTGAAGACA CAGGCAGGGA AACCATGGCT CAGAGCAGAG AAAACATGTG 000880 000881 GGCAGCAGAC CCTGCCTGCC CACCTGAGAG AAGCCTGCCG GCCCCTGGTT GGTGAGAGCT TCTGCTGAGC CCTTGGCCCC 000960 000961 TGCTCTTTAA CATGGACAGG GCTGCTCAGA GCTGGCAGGT CCCTGGGCCG TGGGAATGCC AGGCTCTGTT GGTAGGTGGA 001040 001041 GGGCAGACAT TCCTTGGCTT GTGACACCCT GCACCAACCT GCCCTGGCAC CCTCATGTTC ACCTGAGCTC TGGGGAGGGA 001120 001121 GAAAACAGCT CCGCGGCCCC ACTCCCAGTT TTGAGGACCT TAGCCCCCAT ACTTAGTGTC AGGGCCAGGA CTAGGGATCC 001200 001201 TCACTGGCCT GGGGCACAAA ATGTAAGGGG GCACCAAAAA AACTCAGTAA TCAAGATATT TTATTGTAAT CTTTTAAAAA 001280 001281 ATGAACATGA ATGCTAAAAT ATCCTTATAT TAGGTCCACA TTGCAGCTCT AACAAACTGC CAGAAATTTG GCAGCTTAAA 001360 001361 ACAACACAAC GTGATTATCT TCTAGTTCTG GAGGTCAGAA GTCATAACCA GTCTTCTAAG GCTAAAATCC AGATGTCAGC 001440 001441 AGGACTGGTT TCTTGTAGGA CATGGGGAGA AGCAGTTCCT TGTATCTTTA ACCTTCCAGG GGCTACAGCA AGGCCTTGGC 001520 001521 TGCGGCTTCA GCACTGCAGT CTCTGCCTCT GTCCTGCCCC CACCGCCTCC ACTGTGGTCA AACTTCCTTC TGCCTTCCTG 001600 001601 GTAAAAGAAC CCCTATGATT GCACCTGGCC CCTTAGATAA CCCAGGTTAA CCTCTCCAGC CCTCATCACA CCTACAAAGT 001680 001681 CTCTTGTACT GTGTAAGATA ACACAGCCAC AGGTTCCAGG GATCAGGACA TCTTGTGGGG AAGGGCATTA TTCAGCCAAC 001760 001761 CACATCCATG GTCAAATGCA AACATGTGAA ATAAAGGCAG GAATGTGGTG GGATTGGGGT GGGAGGCACT CACCCTCAAG 001840 001841 GCCTGTGCAA GTGCATAGCT GCTCCTTTCT GTATTGAAAA CTTTGATCTT TTGTTCATCA AAGATTTTTT GCCTAATATT 001920 001921 TATTCTTAAA AGTATTACAA TAAAGTGTTT ATCCTAGTTA CTGAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002000 002001 AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT013272_smProtein_719:934 |
Length | 72 |
Molecular weight | 7581.2237 |
Aromaticity | 0.056338028169 |
Instability index | 82.8028169014 |
Isoelectric point | 4.62969970703 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0248992307816 |
Amino acid sequence | MWQCLPEPSNGWCLQASSHVGLLGRGGGHSAETGQSDSEDTGRETMAQSRENMWAADPAC PPERSLPAPGW |
Secondary structure | LLEELLLLLLLEEEEEELEELEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLL LLLLLLLLLLL |
PRMN | - |
PiMo | - |