NONHSAT015108
Revision as of 10:30, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT015108 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2221 nt |
Genomic location |
chr10-:81194492..81216205 |
Exon number |
2 |
Exons |
81194492..81196086,81215580..81216205 |
Genome context |
|
Sequence |
000001 CACTTCTTGC TGTGCAGCCC AGTTGCTAAC AAGCTATGGA TCGGTACTGG TCTGTGGCCT AGGGGCTGGG GCCTCTGGCT 000080
000081 TAAGAAATAC ATCGTATGTC ATGATCAGGC ATACTAAATA TGTATACAAG TGAATGTCTT TTTTTAAATG ACACAAAAGT 000160 000161 ATCACAAACA ATACTTGTGT GATGTATTCT GATAGACTCA ATTCTTCCAT TTAATTCAAA TAAAAATCTG ATCATGACCC 000240 000241 ATTAAGTTGA TTTCACAACC CACTAATCAG TCAAACCTAC AGACTGCACT GCTTTAAAGA TACTATTCTC GCTGTTGGGT 000320 000321 ATAAAATACA TTGTGGGGGT CGTGGGGGTA GGCAAGAGAA GAGGCAGGAA GCTCAATGAG GAGGATATTG CACAAACTCA 000400 000401 GGCACAAGCA GATAGCAGAT TGGAGCAGGA TGTTGGTGGT GGGGGCAAAG GCCGGTGGGC ACTCTGTGTT TTAGAAGCAG 000480 000481 AATGTGCAGG ACTTATTAAT GAATTAGATG AACAAGAAGG AGGAATTAGT GATGACTTTG TTTTTGGTTT GGGTCGCTGG 000560 000561 GGGAACAGCG GTGTTGATTA CTGACATGGA TTTGCCTGGG GAAAGGAGCT GATTTGCAGG TAATTGGCCA CAACCCTGGA 000640 000641 GTTAGAGCCC GATCTGGAGC CAGGCCCTGG AGGGGTTCTG GATGGACATA GAGAAGGGCA TTCCCAGGCT GAGGCAGCAA 000720 000721 GTGTGGGCTG GAGGGAGAAA GGCAGAGCTG CGCGGTGGGC ATGGTGAGAG GAGCAGGGTT AGGGCTGACA GATGAAGGCT 000800 000801 TTTAGGGCCA CCTTGCACTC CAGCCACAGA AGGAAGGCCA CAGAACAGAT GGTGCCTGTG TCGGCCTCTG CATGCCAGGC 000880 000881 TCCAGGGGCG TCTCTCAGGA CCCGGGTGTC TGGACCCTAG GAAAGCAGGA CCACAGGGAT CAGCAAGGTC ACCCTTCTTC 000960 000961 CCCCTTCCCC GCTCCATTTT ACACTGTACA GATGGGAAAC CCAAGAGGCC AAGCCCCAGC TCCGAGCAGG AGGGGGATAG 001040 001041 AGCTCTGGGT CCTGGCCTCT GTTCCATCCA GTCCCCACAG GCTGTGGAAA CAACCAGGAG ACTGATTTGC CTTTCACCTC 001120 001121 CCTGGCCTGA GCTCAAACGG GGCCTCAGAG AGGAAGCAGC TCACTGCCTC ACCCACCCTT CACACTGGCC AGCCAAGCAG 001200 001201 GATTTCTGGC CCTGGGGCCT GGCTGGGTAC CCTGGTCTGC GTCCCTGTGC CCCTGTGGGC CTCAGTTTCC CCATCTTTCA 001280 001281 TGTGGGAATG AGGTAGGGTC AGCTGACGGT CTCTACCCTT TCGGCTCTAA GGTAGCGTTC GTCTGGAATT AGGGCTGGGG 001360 001361 GATGGGCCCT AATTCCCTGG AGACAGGCTG GAGGGCACTA GAGGTGGGAA GGCCATGAGG AGGGGAAGCT CTGGCCTCAC 001440 001441 TTCTCTCACT GTGGAGCTGC CTGGGGCAGG GGCAAGGCTG CGGCCCTCCA GAGGGTGGGG TGTCGAGCTG CCAAGGAGAG 001520 001521 GGCACCCGCT TAGAGGCCTC TGGCTGCCCA GGGATGCCTG TGGGGCCGTC CGTGGGCAGG GGACTGTGGC CGCAAGATGG 001600 001601 GGGAGAGGTT TTTCAGGGTG TAATTAGTGC ACTTTCTGGC ACCCACCAAA CTTCCCCTTC CTCTTGACAA TTTGCTGCCA 001680 001681 AACAGCCTGA TTCCTGTGGA CTTGCTTAAA TCTTATCCAG GGGAAAAAAA ATAAAAATAA AAAAAAAAGA AAGAAAGAAA 001760 001761 GGAAGAAAAA GAAAAAAATA TTAAGAGGGT TGTTATTTGT GAAATTGTGT TTCCCAGCCA TGAGGGTGAG TCACACCATT 001840 001841 TGGGGCTTCA AGTTTCTTGT TTGGATGAAC TTTTCTCTGG GAGGCTGGGG CGGATTTGGA GGGGGAGGGG GCCTTCTGGT 001920 001921 GTGGGGAAAG TCTTCGAGTC AAGATAAGGG GAGACCCTGG TGGTTGGGAA GTCCAGGTGC TCCAAGGCTG GGTGGGGCTG 002000 002001 GGCTGGTTGT ACCTGAATTG CCTGGGGGAG CTTGAAAAAT ACAGATTGGG CTGCAGTAGG CGGGGGCGTT GTTGTTTCAC 002080 002081 GGGCATGGAG TTTCAGTTTG AGAAGATGAA AAAGTTCTGG AGCTGGACGG TGGCGATGGC TGCACAACAG CATGAATGCT 002160 002161 CTTAATGCCA CTCAACTGTA CACTTAAAAA TCATTGAAAT GGTCAATTTT GTTGTGTATA T |
Predicted Small Protein
Name | NONHSAT015108_smProtein_791:919 |
Length | 43 |
Molecular weight | 4480.1253 |
Aromaticity | 0.0238095238095 |
Instability index | 62.1452380952 |
Isoelectric point | 11.8348999023 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0348121230474 |
Amino acid sequence | MKAFRATLHSSHRRKATEQMVPVSASACQAPGASLRTRVSGP |
Secondary structure | LHHHHHHHLLHHHHHHHHLLLLLLLLLLLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |