NONHSAT021808

From LncRNAWiki
Revision as of 10:33, 16 October 2014 by 192.168.72.52 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT021808

Source

NONCODE4.0

Same with

,

Classification

sense

Length

839 nt

Genomic location

chr11+:62554887..62557639

Exon number

4

Exons

62554887..62554999,62556659..62556682,62556764..62556898,62557073..62557639

Genome context

Sequence
000001 CTGGTGGTCA GGGCGCCATG GCGCTGTCCT GGCTGCAGCG CGTCGAGCTT GCGCTCTTTG CTGCCGCCTT CCTGTGCGGG 000080
000081 GCCGTGGCGG CCGCGGCGAT GACTCGGACC CAGCAGCTGC ATCGAGGACT CCCACAGAGG TGCTATAGGG CTGCGCATTG 000160
000161 CACTGGCCAT CTCAGCTATA GCCGTCTTCC TGGTCTTGGT GTCTGCCTGT ATCCTTCGAT TTGGCACCAG GTCTCTCTGC 000240
000241 AACTCCATCA TCTCCTTGAA CACTACAATT AGCTGTTCTG AAGCCCAGAA AATTCCATGG ACACCCCCTG GAACTGCTCT 000320
000321 GCAGTTTTAC TCCAACCTAC ACAATGCTGA AGTGAGACCC AAGGATAGGA GGAAAAACTG ACATAAATAT CTGTAGCTGT 000400
000401 GTGGGTGCTC ACCAGTGTAT TGTGAGCTTG GCCTACCAGT GAGAGGAGCT GAAGGGGTTG TCAGCTTAAA ATTCAGCAGT 000480
000481 TCAGAGTGGT GTGTGGGTGG GAAGGACTGG ATTTGAAATG GTCCCACTCC TGACGATCCT GTCCCTGTCT CCTACAGACC 000560
000561 TCTTCTTGGG TGAATTTGGT ATTGTGGTGT GTGGTCTTGG TGCTCCAGGT CGTGCAGTGG AAGTCTGAAG CCACCCCATA 000640
000641 CCGGCCTCTG GAGAGGGGTG ACCCTGAGTG GAGCTCTGAG ACAGATGCTC TCGTTGGGTC ACGCCTTTCC CATTCCTGAA 000720
000721 GAATAAGCGG AGTGCTTCCT GCAGCCGAAG ACTCCATGCC CAAGTGCCTG TAATCCCCCC CCTCAAGGCC CTGTTTATGT 000800
000801 TGGGAGTCTT AGTTTTCCTT TCGTTGGGGG GTGGGGGGG
[back to top]

Predicted Small Protein

Name NONHSAT021808_smProtein_17:271
Length 85
Molecular weight 9425.9149
Aromaticity 0.0952380952381
Instability index 40.9392857143
Isoelectric point 9.20037841797
Runs 9
Runs residual 0.0268425841674
Runs probability 0.0326502973561
Amino acid sequence MALSWLQRVELALFAAAFLCGAVAAAAMTRTQQLHRGLPQRCYRAAHCTGHLSYSRLPGL
GVCLYPSIWHQVSLQLHHLLEHYN
Secondary structure LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHLLLLLLLLLLLL
LEEEELLHHHHHHHHHHHHHHHLL
PRMN -
PiMo -