NONHSAT091331
Revision as of 10:36, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091331 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1990 nt |
Genomic location |
chr3-:117231733..117233722 |
Exon number |
1 |
Exons |
117231733..117233722 |
Genome context |
|
Sequence |
000001 GTGGTTCATG GGGAAATGAG AGACTTCCAA ATTGAGGGAA GCAGGAAGAG AAACCAAAGT AGAAAAAAGG CAAGGCAATA 000080
000081 GAATGAGATG GAAAATAAAA ACTATATTTG GGGAGGAAGC TTGGGCCCTC ATGACCACAT GGCCTCTGAG CGTCTCGGCT 000160 000161 TGACACCTTG AAGGGTTGGC CAGTGGAGAG CCACTGACAG GACATAATGA ATGGTGCCCG CCTGTGATAG ATAGCAGTAT 000240 000241 ATACATTGAC CTTTCAAAGG TTTAACGATC TTTTATAATA AGTTAGGGTT GATGTACATT AGATAGACTG ATCGTTGAGT 000320 000321 ATTTATTCAC CCCGACTTTC AGCAGCCTTG GTTGATTGAT TATAGCTTTG CCTACCTTCC CAAATTGCTC CCTTCAACAT 000400 000401 GATGTGCCTA AGCCTCTGTG AAGAAAAAAG AGGAAGCTTT AGTTTGCAAA TTTTTAGAAT ATGGATTAAA ACTCAGATTT 000480 000481 CAGAGCCAGA CCTACATATT TTTCAGAAAT CCAAATTTAA GATAATGTCC CCAGACCCAT CTTATGTAAC TTAAAGTTGA 000560 000561 ACACTAAGGC TATGTGTTAA AATCAAATTT CTCCCCCATC TATACATGTA TTTATTTACA CAGGCAAGCA AACAGAAATC 000640 000641 CATGGGCAAC ATTCTAAATC AGTCCTTCTG AGCTACTATG ATGAGAAACA TTTTCATGAA CCTTCTTAGG TCATAATGAT 000720 000721 ACTTTTCTAC TTCAGATTAT TGCAGGATAT TTTGATCTGA GAGCAACTCT TCAAGTCTAT ATGTGTTTGG Gttttttttt 000800 000801 ttttgtaatt tttttcctat ttttttctct cttatttCCT AAACACTTTT TAAGAGCATA ACCATGAACG AATATTTACC 000880 000881 AGACTGGACC AGTGGTCATT TTACTCTCCA GTGATGGCCA GTGTTCCTAT TTATGAAGGA TATTACGGTT TTATCCTGAC 000960 000961 CTGTGCTGAG AGGCTAAAGA AAAATGATTA TCTTTATAAT GTTCACTGTG TATAATGGCC TTGCTCATAT AACCAGTTAC 001040 001041 AGATAATTAG CCATGACTGT ATTAATTAAT CTTTCAAAAA GGTAAGAACT CTAGTATACA CATTTATAGA ATTAGTAAGA 001120 001121 TGCATGTTGC TTTTAGCTGA ATGGGTCAAA TAAGTATGTG TGAAGAAAAG AAACATTTGA GAGCAAAAAG TACTGCACAC 001200 001201 ACTAAGGAAT TATTTCTCAT TTGGTAATCC AAACTCTGAC TCtgtgtgtg tgcatatgtg tgtatgtgta tgtgtgtatg 001280 001281 tgtgtgtgtg tgACTTTAGA CAACTGAAGA CTTAGCGGTA AGAATTATCT GGAGATTCAT CATTATCTGC TATCATATTG 001360 001361 TGATGTCTTG TTGAATAATA AATGTAAATG CAGTAGAATT TGTTAGAAAT GTATTTAACA TAAATATAAT ACAACAGCTA 001440 001441 AATAACAAGA GCCTCATAAA TATTACTTGG GCACTAAGAA AAGTGAATCC TGGAGTGAAA GGAGAGGAAG ATTTGCTGGA 001520 001521 CCAAGTTTTT ACCTTTATAA CTTCAACCTG TAGACAGTTG GCATCGGGGC TCACATCTCT AATTCAAATG TTCTGGGAAA 001600 001601 TTACAAGTAT AAATCTCTGC CACAACAAGC AGGAGGGAGG ACAAGAGGTC TGCATAACAT TCCATTTGGG AAGATAGATA 001680 001681 GCTTCAGATT GGAACTGGAA TGTTGAAGCA GTCTAAATCA ACACACATGT TTCCTTTTGA GTCATAATCA GATAAATGGT 001760 001761 AGGTGATGAC CACAGGGAGG AAAAAGAAAA GTCCAGAAAA TAATGTTTAT GAATTTACAA TTTTCAGAAA AATAATATGA 001840 001841 AATATCTATT GAAATTTGTC CCTTACTAAT TTAGCATAAG ACATTACTGT CCAGCAGTCA AACCAACGTA TGTGAAAATG 001920 001921 TTAGGACCTG AAATGCCCAT AAAAGCTTTT GAGACTTGTG AAGATGCCAT TTGTTGTTCA AACGTGCACC |
Predicted Small Protein
Name | NONHSAT091331_smProtein_398:553 |
Length | 52 |
Molecular weight | 6039.0968 |
Aromaticity | 0.117647058824 |
Instability index | 55.3274509804 |
Isoelectric point | 8.73822021484 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0286168521463 |
Amino acid sequence | MMCLSLCEEKRGSFSLQIFRIWIKTQISEPDLHIFQKSKFKIMSPDPSYVT |
Secondary structure | LEELLLLLLLLLLLLHHHHHHHHHHLLLLLLLLEEELLLEEEELLLLLLLL |
PRMN | - |
PiMo | - |