NONHSAT028158

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT028158

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1514 nt

Genomic location

chr12+:50318239..50324205

Exon number

5

Exons

50318239..50318296,50318718..50318870,50319863..50319928,50322795..50323326,50323501..50324205

Genome context

Sequence
000001 CCTTGACTGC AAAGGGCGGC ACGCAGCTGA TGTAATGGTC GCTTAAGTGT TCACAAATGG CCTGAACACC CTGTCCTACC 000080
000081 TGGTCCTACC TGGATGCTGG CCTCAGTAAG CTCCTGGGCT CATTGAAGAT GAACCTAGCA GTAGTATTTA Caccacttgt 000160
000161 tgtgtgccca ctgtgggccc ggcgccatgc cgagtgctct aTGGATGTGa ggagaaacgg aggcccagaa agcagaaatg 000240
000241 atgtgttaag atcactcatc aagctgatgg tacagagcct gacctcgtga tctacccgcc tcagcctccg aaagtgctgg 000320
000321 gattagaggt gtgagccacc gtacccagcT GAGTTTCCAA ATATTTCTGA TTTCACCAGC GGGGGAAGAC TGGCAGGCTC 000400
000401 CTATATCCTC GAAGTATCCT GCCATGAGAT GCCTGCAGAG TGGGGAATGG CATCACCTTT CCAACCCTGT GCAGCACCCA 000480
000481 GTGCGAGCTG CTTATTAGTG GGAACTGGAG AGGAAGAGGA GGAAAAGGAG GACCCATGGC CATGGCTTTT TCTGTCCTTG 000560
000561 TAACCCTCAA CTGATATGTA TCCCATACTT CTTGGTTGGG CAGAGGGGAG AGCAGAGGTT GACAGGTCAC ATTTCCCTCA 000640
000641 GTTTTCCATC CTTCCTTCAG TGCTGGGAGA GAAAAGCATA CGACATAGAC AGGGAGGTCA AGCTCCACCA CGCAGATGAG 000720
000721 GTGCAGGCCA CCAGTCTTCC TCTGCCACAT CTCTTTCTGA AAAGGTAACC CTGCACCGCC TTCCCATTGG CTGCCACCTT 000800
000801 GCATCCCCTC ATGACTGAGT AAGCCAAGCT TTGTTGGCCG CACCTGCCAA GCCACAGGGT GCCTCAGGCT TGGAGCATCC 000880
000881 CGGAGCCAGT TACAACCCAA GACTTCAGCC TTCTGGAAGG TGTTGGGTCA GCCACCCTGA AGGACGATCC TGCCCAAGTG 000960
000961 ACATGCTTTG CTCTTCCTTC TCACCCAGGA CTTCACATTC ACCCTTGCAA TCCATGTGGG GACACTGTTG GATAGGAGGC 001040
001041 GTGGTCCCAG CGTGGTCTCC CTGTCTGGGC CTCTGCCTAT GCCAAATGTT TGCCTTACGC TGCACACTCA AGAGGTTCCA 001120
001121 TGTATACAGA TGGGAATTCC AGAGCTACAG AAAAGGCAGC AAGCACCATG ATTTAAGCTA ACCAGTGTGG ATTCACACCT 001200
001201 TCCTCTCTCT CTATCAGTGG CAGAACTACC AGCTAGAGTA AGAAGTGGTT GATCCAGGAC CTAAACATTC TGGAAACTCT 001280
001281 TGCCCACTTC TGGGAGAAAT GACCCAATCC ATAGTACTAA GCACACCTTA ACTTTCGTAG GACGCAGGCA AGTTGTcata 001360
001361 ccgtgtgcct aaatatagaa aaatgatcca ctggactaat aaagtgttaa ataaaatatg tcctgactgt ctactttgac 001440
001441 aacatacttt cataatgaca aaacttaaaa atgtataaag ctatggtttt tatatagttg aaaattgaca aaac
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Predicted Small Protein

Name NONHSAT028158_smProtein_962:1180
Length 73
Molecular weight 8374.7381
Aromaticity 0.138888888889
Instability index 70.2819444444
Isoelectric point 9.33587646484
Runs 11
Runs residual 0.0118613138686
Runs probability 0.0456954280484
Amino acid sequence MLCSSFSPRTSHSPLQSMWGHCWIGGVVPAWSPCLGLCLCQMFALRCTLKRFHVYRWEFQ
SYRKGSKHHDLS
Secondary structure LLLLLLLLLLLLLHHHLLLLLEEELLEELLLLHHHHHHHHHHHHHHHHHHHLEEEEEEEE
ELLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL
LLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii
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