NONHSAT092379
Revision as of 10:42, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092379 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2318 nt |
Genomic location |
chr3+:139326525..139328841 |
Exon number |
1 |
Exons |
139326525..139328841 |
Genome context |
|
Sequence |
000001 ATTGTTCCAA TAGTCAGAGC TATATAAAGA GGAACACTCA GAGAAGGGTC TCTCTGCCCT CATCCTATCT TCTACCCCTT 000080
000081 TGCCATTTCC CCATTCTTTC TATTCTGTTC CCATCTACCC GTTGTAAGCC ACCAATTTCA TTAGTTTATA AAATCTATTC 000160 000161 TTAAATGATT TTGTCCTTTT AAGATTTATT TTCCCTATAA TTATCAGTAA CTCATAAATT TCCCCAAGGC CTAACTCCGT 000240 000241 CTTGACAACC CCATCTTTAG GAATATTTAT ACAGACACAT CTATTCAATT CACTTTAATT AATGTCTTTG TGCTGCTGGG 000320 000321 AATTTTACCT CACTCTGTTT TATCTGAGGC ATCCTGGGTT TTCTGAATGC TCTTTGCATG GTTTCTCTTT ATGGTCTGTT 000400 000401 TAGCAAAGAA GCCAACTGCT GGTTCTCCAC TCTGAATGAT CATCGCTTCC CATTTGGAAG ACAAAGATGG TTACTGGCCT 000480 000481 TGGCATATTA ACCCTGGAGC TGCCTCCTCA GGAAGTGAAG AGTTGGGCTT GGCTGGCTGG TATAGCAGCA GCGACAGCAG 000560 000561 CAGAGACAGC ATGGCCTGCT CAGAAGGGGC GCCCTAGTTG CCAAGGATGA GGGCACTGGC TTTGCACTCT TTGAGACTGG 000640 000641 GGCTTTACCT AACACTTGCA AAACTTATTA CCCCTCCAGT CCTCAAGTTT CCTTGTACCT ATAGAATAGG AATGTTAAAA 000720 000721 CTTACTTCAC ACGACTGTTT TGAGGATGAA TTGGCTATTT GAAAACTTGG GCACTGGAAG AAGTCCAGTG AAGGACAGTG 000800 000801 TCACTTCCGC TGTTCACCCT TTCATGCTTA ATTAACATTT AATTAATCAA ATATGTTGTT TCTTTTTGTA TTTTTTTAAC 000880 000881 TGAGATAAAT GTAGATTTAC ATATAGTTGT AGAAATAATA CAGAATTATC CCGTGTACCC CTTACCTAGT TACCCCCAAT 000960 000961 GGTAACATCT TGCAATATTA TACCACAATG TCACAACCAG GATATTCAGA TAGATGTCAT CCACTGATCT TACTCAAAAT 001040 001041 TCACTCATTT TCCATACAGT CCTTTGATTG TGTGGTAGTT CTGTGAAATT TCATCCCATC TGTAGTTTTC ATGTAATCAT 001120 001121 CGCCACAGTC AAGGCACAGA ATGCTTCACT TCCATCACTA TAAGGAACCC TTGTGTTGCC CTTTTATAAC CACACCCACT 001200 001201 TCTCTCCTCT CTCCCAAACT CCATCTCTAA TCCCTGTTAA CCACTGATAT GTTCCTTACT TACACAATTT TATCATTTCA 001280 001281 AGAAAGTTAC AGATATTGAA TCACATAGTA TGTAACCTTT TAGGATTGGT GTTTTTCACT CAGCATTATT CCCTGGAGAT 001360 001361 CATCCAAGTT GTTGCACGAA TGATTTGTTT CTTTTATTGC TGGGGAGTAG TCTATGGTAT GGATGTATCA CAGTTTAATT 001440 001441 ATTCGCCCCT TGAAGGACAT TTGGGTGGTT TCTAGTTTCT GGCTATTGTA AATGAAACTG TGATGAACGT TTGTGTACAG 001520 001521 GTTTCTGTGT GAACACAAGC TTTCATTTCT CTGGGATAAA TGCCTGTGAG TGCAACTGCT GGGTCATATG GCAATTGCAT 001600 001601 GTTTAGTTTT ACAAGAAACT GCCAAACTGC TTTCCAGAGT GGCTGTGCCA TTTTAAATTC CCTCCAGCAA TTATAAGAGG 001680 001681 TGCAGTTTCT CGGCATTCTT TCCAAAATTT GATGGTGTTG CCATTTTTTA TCTTAGCCAT TTTGGCAGGT GTGTAGTAAT 001760 001761 ATCTTATTGT GGGTTTTACG TTGCATTTCC CTAATTGTTA ATGTTGTTAA ATATTTTCTC ATGTGCTTAT CCGCTATCTG 001840 001841 TGTATCCTCT TCGTGAAATT GTTCTTCATG TATTTTGTTC ATTTCCTGAT TGTGTTTTAA TTGTTAAATT TTTAAAGTTC 001920 001921 TTTAGATATT CTAAACACTA GTCCCTTGTC GGATATGTGG TTTGCAACTT ACTTGTTTTT TTTTTCAAGA GACAAAATCT 002000 002001 TGCTATGTTG CCCAGGCTGA AGTGCAGTGG CTATTCACAA GTGCTATCCC ACTATTAATC AGCCCAGGAG TTTTCACCTG 002080 002081 CTCTGTTTCT AACCAGGACC TGTTCACCAC TCCTTAGGCA ACCTGGTGGT CCCCCACTCC CAGGAGGTCA CCATACTGAT 002160 002161 GCAGAACTTA GTGGATCAGC ACAGTGCACT ACAGCCCAGA ACTCCTGGGC TCAAGTGATC CTCCTGCCTA AACCTCCAGA 002240 002241 GTAGCTGAGA CTACAGGTGC ACACATTAAG GAATAAGACA GTAAAACTAA ATAAGCAAAA AATAAAACAA ATATATGT |
Predicted Small Protein
Name | NONHSAT092379_smProtein_1559:1675 |
Length | 39 |
Molecular weight | 4048.5812 |
Aromaticity | 0.105263157895 |
Instability index | 60.5052631579 |
Isoelectric point | 7.72808837891 |
Runs | 7 |
Runs residual | 0.0115997229917 |
Runs probability | 0.0274812627754 |
Amino acid sequence | MPVSATAGSYGNCMFSFTRNCQTAFQSGCAILNSLQQL |
Secondary structure | LLEEEELLLLLLHHHHHLHHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |