NONHSAT039186
Revision as of 11:04, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039186 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1086 nt |
Genomic location |
chr14+:89883698..89886137 |
Exon number |
2 |
Exons |
89883698..89884140,89885504..89886137 |
Genome context |
|
Sequence |
000001 GGGGCACTGA CCCGCCGGGG CGGACCCTGC CCGCGCCCCC CGCGCGCCCC AGCACTGAGC CAGGGCGGAG GCCGGGGCTG 000080
000081 GGCCGCGCGG CCTCGCCTCT TGGGCCCCGC GGGGCGGGGG TGACCGGCGC GGGTCCCGCG ACCCAGGGCG GCCGCGACCG 000160 000161 TGGGCGGTGG GGCAGGTGGG TCAGGCGGCG CGTGCCCTGT CCCCTCCCCG GGCTCCGGCC ACACGAGCGG GCCGGCGCTG 000240 000241 CGCTGCTGGC AACGTGTCGC GGGAACGCTC CTACCCCATC TGCATGCCTT ACATGGCTCG AAAGTAAAAA TAAAAAGAAT 000320 000321 TACGATGCGG GCGAGGCTTG TGGGGGTGAG AAGAGGAGAT TCCACGTCTC CCCAGTGCTG CGTCCTGATA GGACCCCCAG 000400 000401 GGCCTTCCGA GCCCTCTCCC AGCGACCACC TCGTGTCCCG GAGTTGCAGC AAGAGATGTG AGAAGGTGTC ACCCTGAAGA 000480 000481 GGAAGTGGTG GACCAGCCCT GCCTGATGTG GACAGCAGGG GACACATGTC TGCCTGTCGG TCTATCTGAA ATGGGGGAAA 000560 000561 AAATGCTGAA AGCCAAAGGA GGGCTTAATG TGGCCTTTTC CACCTTCTAA TTCCATAGAA CCTCAGCTCT GGGACTTGCT 000640 000641 TCCTGACCTA GGGTGCAGGG GCCAAATTTG TTTGGGAACA ACCCCATTCA CAATTCCCCA TGAACTTTCA GAAAGGACCC 000720 000721 TTGCGTCTTA GGTCCTGAGA AGTCACAAAT AAGCAAGCTG CATTGTCTAA TGTCTTGTCT ACACTGTTTT ACAAACACAT 000800 000801 TTAACAGCCG AATTGTATAT GTGCCCTAGA AATCACTTTG AGAAACACTT ATTTCCTGAT AGAGGACTTG ATGGGACCAT 000880 000881 TCTGCAGCCC CATCTGAGCA TGGGCTGGAG AGTACATAAG TATCTGGGAG CTGGAAGTCC TCAATTCCAG GCTTATCTGC 000960 000961 CCCCATCAGC GTGGGACCTC AGTTCCTCCT CCAAGGAGAA GAGCGCCCCT CCCTTGATGT TTTGTGCATT CTTTTGCTAA 001040 001041 ATGTTTCTCT GGTCAAGAAC TTTAATCCCC CTACACAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT039186_smProtein_818:1039 |
Length | 74 |
Molecular weight | 8267.4642 |
Aromaticity | 0.13698630137 |
Instability index | 52.2301369863 |
Isoelectric point | 8.57415771484 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0275248510542 |
Amino acid sequence | MCPRNHFEKHLFPDRGLDGTILQPHLSMGWRVHKYLGAGSPQFQAYLPPSAWDLSSSSKE KSAPPLMFCAFFC |
Secondary structure | LLLLLLLLLLLLLLLLLLLLELLLHHHLLHHHHHHHLLLLLLEEEELLLLLLLLLLLLLL LLLLLLEEEEEEL |
PRMN | - |
PiMo | - |