NONHSAT034461

From LncRNAWiki
Revision as of 11:24, 16 October 2014 by 192.168.72.52 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT034461

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

890 nt

Genomic location

chr13+:79344722..79390080

Exon number

6

Exons

79344722..79344832,79380948..79381011,79384531..79384638,79386852..79386996,79388670..79388758,79389708..79390080

Genome context

Sequence
000001 GACTAAGATA CTTGAGTGAA ATTCACTAAT CTGTTTTTGC CAAAGAGCAG ACCCGCTCTT CCCATATGGA CCACAGGGCT 000080
000081 CCAGCTCTCT AGTATCCTCT GGCTATTTTC TTAATAATAA TTTATTATAT AGTTTAAAAG ATAAGAATTT TAACATTCCC 000160
000161 AACACAGCAA AAGATTATTG CCGATCCTTA ATTTTCAACA GTTTGATTAT GTCACAGGAT AGTCTTATTT GGATTGAATT 000240
000241 TGATGGAGAC TTTTGGCTTG CCTGCACCTA GATATTTGTA TCTCCTCCCA GGCTCAAGCG ATCCTCCCAT GTCAGCCTCC 000320
000321 CAAGTACCTG AGACTACAGG CAAGTGCCAC CATGCCCAGC TAATTTTTGT ATTTTTAGTA GAGATGAGGT TTTGCCATGT 000400
000401 TGGCCAGGTT GGTCTCAAAC TCCTGGGTGT TGCCCTGGAT ATTTTGGAAG TTATAGAGCG CAAGTCTTGA ATCTGTTATC 000480
000481 ATTTTTAAAA TGTGTTATAT TTTACTATGC AAATACAAGG CGAATATGCT GAAAGTATAA GTTAAGCCCT TGTGAAATTA 000560
000561 CAGAAGGATG ATGACATTAC AAAGTTTTTA GAAAAGATAT ACACAACTAC TATTACACTA ATACGAAAGA ATATACTGTT 000640
000641 TATATTTTTT GCTGGTTATA CTCTATCTTA AACTATTTCT AATTAAAATT TCTCTTATTT CCTCATATCC TCCAATATTC 000720
000721 CAACATTTGG TTTTATAATA TTATCTGTTG ATTAACAAGC CTTTTGAAAT CACTGAAAAA TATTTTAAGA TTATAGTATT 000800
000801 TCATTGCATG AGTGGTTTTC AATGATACTG TGATCGTGAC CTGAATTTTC TTATCAAGTA TAACAAATCT TCTCTGATGT 000880
000881 CTGGTTAATT
[back to top]

Predicted Small Protein

Name NONHSAT034461_smProtein_242:469
Length 76
Molecular weight 8283.6872
Aromaticity 0.08
Instability index 44.528
Isoelectric point 6.24298095703
Runs 7
Runs residual 0.0556028368794
Runs probability 0.0431397784339
Amino acid sequence METFGLPAPRYLYLLPGSSDPPMSASQVPETTGKCHHAQLIFVFLVEMRFCHVGQVGLKL
LGVALDILEVIERKS
Secondary structure LLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELHHHHHH
HHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL
LLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii
iiiiiiiiiiiiiii