NONHSAT034461
Revision as of 11:24, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034461 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
890 nt |
Genomic location |
chr13+:79344722..79390080 |
Exon number |
6 |
Exons |
79344722..79344832,79380948..79381011,79384531..79384638,79386852..79386996,79388670..79388758,79389708..79390080 |
Genome context |
|
Sequence |
000001 GACTAAGATA CTTGAGTGAA ATTCACTAAT CTGTTTTTGC CAAAGAGCAG ACCCGCTCTT CCCATATGGA CCACAGGGCT 000080
000081 CCAGCTCTCT AGTATCCTCT GGCTATTTTC TTAATAATAA TTTATTATAT AGTTTAAAAG ATAAGAATTT TAACATTCCC 000160 000161 AACACAGCAA AAGATTATTG CCGATCCTTA ATTTTCAACA GTTTGATTAT GTCACAGGAT AGTCTTATTT GGATTGAATT 000240 000241 TGATGGAGAC TTTTGGCTTG CCTGCACCTA GATATTTGTA TCTCCTCCCA GGCTCAAGCG ATCCTCCCAT GTCAGCCTCC 000320 000321 CAAGTACCTG AGACTACAGG CAAGTGCCAC CATGCCCAGC TAATTTTTGT ATTTTTAGTA GAGATGAGGT TTTGCCATGT 000400 000401 TGGCCAGGTT GGTCTCAAAC TCCTGGGTGT TGCCCTGGAT ATTTTGGAAG TTATAGAGCG CAAGTCTTGA ATCTGTTATC 000480 000481 ATTTTTAAAA TGTGTTATAT TTTACTATGC AAATACAAGG CGAATATGCT GAAAGTATAA GTTAAGCCCT TGTGAAATTA 000560 000561 CAGAAGGATG ATGACATTAC AAAGTTTTTA GAAAAGATAT ACACAACTAC TATTACACTA ATACGAAAGA ATATACTGTT 000640 000641 TATATTTTTT GCTGGTTATA CTCTATCTTA AACTATTTCT AATTAAAATT TCTCTTATTT CCTCATATCC TCCAATATTC 000720 000721 CAACATTTGG TTTTATAATA TTATCTGTTG ATTAACAAGC CTTTTGAAAT CACTGAAAAA TATTTTAAGA TTATAGTATT 000800 000801 TCATTGCATG AGTGGTTTTC AATGATACTG TGATCGTGAC CTGAATTTTC TTATCAAGTA TAACAAATCT TCTCTGATGT 000880 000881 CTGGTTAATT |
Predicted Small Protein
Name | NONHSAT034461_smProtein_242:469 |
Length | 76 |
Molecular weight | 8283.6872 |
Aromaticity | 0.08 |
Instability index | 44.528 |
Isoelectric point | 6.24298095703 |
Runs | 7 |
Runs residual | 0.0556028368794 |
Runs probability | 0.0431397784339 |
Amino acid sequence | METFGLPAPRYLYLLPGSSDPPMSASQVPETTGKCHHAQLIFVFLVEMRFCHVGQVGLKL LGVALDILEVIERKS |
Secondary structure | LLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELHHHHHH HHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL LLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii iiiiiiiiiiiiiii |