NONHSAT093762
Revision as of 11:24, 16 October 2014 by 192.168.72.52 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093762 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1247 nt |
Genomic location |
chr3-:184999482..185000728 |
Exon number |
1 |
Exons |
184999482..185000728 |
Genome context |
|
Sequence |
000001 GCGTAACTTC CTGTGCGCCA CGTCCGGCCG GAATTCCACC GGACCCGCAG TCCCGCTGAG CGCCCGACTC GGCTAGTGAC 000080
000081 GTCACTTCCG ACCTGTCTTT GAGTTCACCT GGCATCCTGA TGCGCTCCAG ATCTTGCTTG TCGGATTTTA TTTCGCCGGT 000160 000161 TTGCTTCTCC GCCTGTGTAT CTAGCCTGGA AAAGTGCATG TTATCTTTTT GCAAACTTCT TTAGCCTTCT TTTCGGCAGC 000240 000241 CACTTCCCTC TGCTCCTTCT GTAGCTTGGA CTCATCACTG GTCAAATTCA CCTGGCCTCT TGGAGAAATC ATGATTGTTA 000320 000321 CTATGATTTT TCTTATTTAT CTACCtagtg gagtgctaag agtgcaggca gtgaggttgt gctatctggt ttcaagtgct 000400 000401 gcctctcact tctaacagtg ttacctgggc atgatactta acctctctgt gcccacttca agtgtgaaac ataatactag 000480 000481 tacctagaaa ataggacgat tgtattactt gagataatac gtggaaagca ctggcatatt gaaagcattc gatgagtgtt 000560 000561 aaccattact TTTTGCACTA CTATGCACTC TTATTCCCTG TTGGAACATA CCTGTGCTTA AGGACAACTG GAACCAGATT 000640 000641 TCCTGCTACC CTTTATGTCC CCCCTACTTT TTTTTATGTT TATGGATACT CGGCTTTTAA TTAATTGATG ATGCCTGGCA 000720 000721 CCCTCTTCGG AACTGTGAGC CCCTCCAGAC AAAGTTGGAA TCTTATATAG AAAACAACTT TAACCCTGCT GGAAATAACC 000800 000801 TGCTTAGTTA Ttgtgctagt taatggggga aagttgaata aaacccaggc cctaccctca agaaCGTGGA GATACTCAAT 000880 000881 AAATGATAGT GGGAGGAAGG AAGTCAACCC AGGAAAAAGC AGAAGGGACC AGCTGAGCTG AAGATTTATC TTTGCCCAAA 000960 000961 AATTtcgcag aatgacagaa ctgaaaggaa cttttagagg caatcactta gtcaacctct tgctgttaca ggtaaggaaa 001040 001041 attggatcca aagaagcgtc taaatgtcac acaatgagtt tcaatgctag caccaaaagt agagtctcAA AATGCTTGCC 001120 001121 ACCTCTCCCA TTCCCAAAAT CTGCCTCAAA ATGTTAATAA GGTAAGGGTA GATTCACTTT TAAATCCTTC CCTCTCAAGT 001200 001201 GAAAAGGATT AGGAAAATCC CAGTCCTGGA GAGACAAGGG CAATGTA |
Predicted Small Protein
Name | NONHSAT093762_smProtein_971:1156 |
Length | 62 |
Molecular weight | 6717.9303 |
Aromaticity | 0.0491803278689 |
Instability index | 43.7147540984 |
Isoelectric point | 10.2473754883 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0378782143489 |
Amino acid sequence | MTELKGTFRGNHLVNLLLLQVRKIGSKEASKCHTMSFNASTKSRVSKCLPPLPFPKSASK C |
Secondary structure | LLLLLEEELLHHHHHHHHHHHHHHLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLL L |
PRMN | - |
PiMo | - |