ENST00000333482.4
Revision as of 14:40, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000333482.4 |
Source |
Gencode19 |
Same with |
lnc-TMED7-2:1,NONHSAT103316 |
Classification |
intergenic |
Length |
706 nt |
Genomic location |
chr5-:115027159..115027864 |
Exon number |
1 |
Exons |
115027159..115027864 |
Genome context |
|
Sequence |
000001 TTTTTTTTTT TTTTGAGGCA GGGTCTCACT GTATTGTCCA GGCTGGTCTT GAACTCCTGA GCTCAAGTGA TCCTCTCACC 000080
000081 TTGGCTTCCC AAAGTGCTGG GATTACAGAC AAGTCATGGC AGCTGGCTGA GTACAGTTAT TCAGCATAAG CATAACAAAA 000160 000161 ACAGAATGGC AGCCCAGTTC CTTTGTTAAT GAAATAGTAA GGGTGTAACT AGGGCAAGCT GGCCCTGTTT ATGTCACATG 000240 000241 AGTTTGTTTT AGAAAGCATT CTTGAGAACA CAAACAAAAC AAAAGAAAAA ATTTTAGAAA TACACTCACA TTTTAATATA 000320 000321 AAATGGACTG CGTTTTGTGG CTATATGATA ATTTTCAACA TAAATCTCCT TAAGAAGGGA GTCACATGTT CTGGAGAGAT 000400 000401 CTAAATTTAA TACAATCTCA TAGGGAGCAA AATAAGGAGT TGCTGTGATA AACTTTTTGC TTTGCCAGGT ATGGGCTACA 000480 000481 ATGATTGGTT GAAATCATCC AAAAATGAAC TAAAATCACA AATTCATTTT CACAGATTTA TTGTTAGAAC TTATGTTGCT 000560 000561 TCCTTAAGAA AACGCAACTA TATTAACTCT TGGCTATTGC AGTCAAGAAT AAAACAGTCA AGGGGAAAAA AAACCAGTGG 000640 000641 CTAAATTTAT AAAGTTATGT GTATTTGGCT TTGAAATATT TTTGGAATGT GAAACTGGCC TCGCTT |
Predicted Small Protein
Name | ENST00000333482.4_smProtein_230:403 |
Length | 58 |
Molecular weight | 6614.6875 |
Aromaticity | 0.105263157895 |
Instability index | 45.0315789474 |
Isoelectric point | 6.81243896484 |
Runs | 12 |
Runs residual | 0.0565789473684 |
Runs probability | 0.0506756756757 |
Amino acid sequence | MSHEFVLESILENTNKTKEKILEIHSHFNIKWTAFCGYMIIFNINLLKKGVTCSGEI |
Secondary structure | LLHHHHHHHHHHLLLLLHHHHHHHHHLLLEEEEEELLEEEEEEEHHHLLLLEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiii |