ENST00000369122.3
Revision as of 14:42, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000369122.3 |
Source |
Gencode19 |
Same with |
lnc-LIN28B-1:3 |
Classification |
intergenic |
Length |
1716 nt |
Genomic location |
chr6+:105585562..105617820 |
Exon number |
4 |
Exons |
105585562..105585798,105595151..105595255,105614419..105614577,105616606..105617820 |
Genome context |
|
Sequence |
000001 GGCCTCCTGC TGCGGAGGAA GAGGGGGAAG AGGCCGCGCG GGAGGGACTT CTGACACGCG CCACTGTTTT TGTTTTCAAA 000080
000081 CAGGGGTACT TAACCGAAAC TAGCAATCCC AGGCGGTACA AGGCCCTCCA TCGTAGGCAA AGCACTACCT GAATGTAGAT 000160 000161 TTGGGCCATA CGTTGGAAAA TAAGACATGA GAGTATGCTC CGATCAACTT TTACTGTTCA CTGGACAACT ATTTTGGGAA 000240 000241 TTTGCAGACC TATAAAGCCC ATCTATAAAT CTCAAGCATG TCCACTTTCA GAGAAGAGAA ATGCTGACAA CCATTTAGTC 000320 000321 TCTGAGGACA ACACTTTTAA AGAGCCAGAA AGGTACATTT CCTCTTCATG TGTTCTCACT TCCATCCTTT ACCTCGGTGA 000400 000401 AAAGACGTTT TCCTTCCGTA CACTCATCAG TCCAAGAGGG ATGAAGCTTG TGGAAATTTT GCAGCAGCCT TCCCTGACCA 000480 000481 TGGTGGCCTG AAGTGCACCT TTTATACAGG ACTCCATCAT AGGACTGGAG AGAGATTGGA TGTCAGAGTG ATTGATGTGC 000560 000561 TCCTACTGGA AGAAGGCAAA CATCCATATG TGAACTGCCT GTGGGGTTTC CAAGGAAAGG AACGGCAGGC AGCCTCTATG 000640 000641 AGCTTAAAGA AGATAACTGG GACTTTAGTC CTATAACCTC AAGGAACAGT ATTCTGTGAA CCATCTGAGA AGCTTGGAAG 000720 000721 AGGACCCCAA ACTCCAAATA AGAAGCTCAG TGTGTCTGAC ACCTTGACTG CAGGCTTGGG AGGTCCTGAG CAGAAGATCC 000800 000801 AGTTCAACAG TGCCTGGACT CCTGATCCAC AAAAACTGAT AACAAATATT TATTGTTTTA AGATGCTAAG TTTGTAGTCA 000880 000881 TTTTTTATAC AGCAACAGAA AACTAAACAC ACACATAAAC AGTTATAAGT GCTCACTGTA TATGAGGCTT TTCATTAATA 000960 000961 ATCTATATTT TATAATAGAA TTAGAATATA GATCTGTGAA GCTGAAGACA CTCAATCCTT GCTAGATTTA AATCAGGAAA 001040 001041 ATCAGCTGAG AATCATTCCT TGATAGAACC TGGAAAACAA GACCCTATGA GAGACCCTGG GAATTACATT AAATTCACTG 001120 001121 TGGTTCCCAG TGTCACTGAA GAGGTTTTCC TTTCATAGTC AGGTAGTCAC CATACTGTTA AGCATTTGAA CACATGGGCA 001200 001201 ACTTCCAGAA TAGTTATGAC ATTGATATAC CAATCTCCAA AATTCCTAGA ATACCATGTT TTCATGGTTG ACCTTCAAAT 001280 001281 CAGTCAGTTC TTTGTAACAT TGAGCCATAA AGATAGGGCA AATACTTAAT GTTTTACATA TATTCAGAGA TTGACCCTCA 001360 001361 AAATACAGCC CAGAGAAACT CAAAAGAATT AACTCTATTT CTTCAAATTG TGTGACGCCA CCAAGGCCAG ATGACTTCAG 001440 001441 CATTGGGAAG GCAATATCCA GCTGTCATCT TCTTGATCCT CATATGCTAC TACTAGCATC TAGCATTTAC TGAGCAGATA 001520 001521 GTTTTATTGT CCAGTTTTTA AAGATAAGAA AATTGAGGTA TTAGGAAAGT TAAGTTGGTT GCCTAGGGAA ACACGAAGAT 001600 001601 ATAGCCCAGA TTCACTCCCA GGCAGGCAGA TGCCAGTGTC TGCTCTCTTT ACCACCGAAA TATCCTGCTA CATGTACAAT 001680 001681 TTCAATAAAT ATCTGGACTT ACTGGAACAA AACAAA |
Predicted Small Protein
Name | ENST00000369122.3_smProtein_194:490 |
Length | 99 |
Molecular weight | 11177.9511 |
Aromaticity | 0.0816326530612 |
Instability index | 61.1428571429 |
Isoelectric point | 9.18231201172 |
Runs | 18 |
Runs residual | 0.0446309364867 |
Runs probability | 0.0406779328348 |
Amino acid sequence | MLRSTFTVHWTTILGICRPIKPIYKSQACPLSEKRNADNHLVSEDNTFKEPERYISSSCV LTSILYLGEKTFSFRTLISPRGMKLVEILQQPSLTMVA |
Secondary structure | LLLLLEEEEEEEEELEELLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLEEEELLL HHHEEELLLLEEEEEEEELLLLLEEEEEELLLLLLEEL |
PRMN | - |
PiMo | - |