ENST00000409590.1
Revision as of 14:46, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000409590.1 |
Source |
Gencode19 |
Same with |
lnc-VRK2-6:1 |
Classification |
intergenic |
Length |
2036 nt |
Genomic location |
chr2+:59444843..59506535 |
Exon number |
3 |
Exons |
59444843..59444909,59482298..59482397,59504667..59506535 |
Genome context |
|
Sequence |
000001 AACAAAAGGC AACATTTCCT GAGTAAAGGG CTTGATATCA ACCCCAGGGA GGATTTCTGG ACTCCAGTGC AGTGCCTGCT 000080
000081 ATGAAGCACA CACAATGCTT ATCTGCTGCT CCATTGGAAA GCCAATAGCA AAGAAGGGAA AGGACCTTCT GATTGGAGAG 000160 000161 TGGAGGAAGA GGCATCATCT TTGATCATCA TCAGATTTTA CAACTCATTG TTCCCTTCCA GTCCACAGGG TGAGAGAATC 000240 000241 ATGTAAATGG TCAAACAAAC ACTTGGATTA TAGAAGACAC TTGATATTAA TAATGACAAT AAAAATGTTT ACCTAACTTG 000320 000321 GATAGATTTT GTGTATAGAT AGGATGTGTG TGCGCATGCA CGAATGTGTG TGTGTGTGTC TGTGTGTGTG TGTGTGTATA 000400 000401 CTCCCCCCTT ACTGGGAAAG GACATATCAG AAGATCAGGA AATGCATTAC ACAATTTTTG TATGCAATAT TAGTCCATTT 000480 000481 CTTGGCGGAG ACCCAAATCT ATTGTGGCGA GAAAGTAATA GATGAACTAA CTAGGGACTC AGACTTACTG GCTAGTGTCC 000560 000561 AAGAAACATT AAAAAATTGA GTACTGAACA TAACAAGTAG GATGGTGCAT GCAAATTTAG ATGTCTTATT GAAAACAGCA 000640 000641 CATTTATTAA TATATTAGAC TTGTAGACGT GAGGGTGTTT TAATACCTAC TCAGAAATTA CTCATGGGTC GGCTTCACAG 000720 000721 AAATATCACT TGCATAAGTG TGAGCTTCAG AGAAATGGTG CCAGGCATGA GTGATCATGG CTGGACTAAT CTAAAGAAAA 000800 000801 CTGGAATGCC TGTAGTTAAT GATACTATAT TTTACACGTA AAAATTTTTA AGAGGGTAGA TATCATGTTA ACTGTTCTTA 000880 000881 TCACAATGAA ATAAAAATTT AAAAATAAAA CTGATTAATG GGCAAAATAT GTTATTGTCA TTGTCAAACT GTCATCTTTC 000960 000961 TTCCTAATTC CTTAGAAACT GCTTAACATA ACTTTATTTG ATGCCTACTA TGTGTCAGGC TATTTTCTAA GACACTAGAA 001040 001041 ATATCCAGAT AAAGTAAAAA GATTAAAAGC ATGATTATAT AGGAACTACA TTTTTGTCAG ATTTATTTAA GATAGCATTT 001120 001121 ATGTACAGTA AAATGTACCC TTTAAAATGT ACAGCTTGAG GAGTTTTGAC AAATATATAC AGATATATGA CCATCACTAC 001200 001201 AATCAATATA CAAAACTTTT CCATCATCCC AGAAAGTTCC CAGCTGATCT CTGTAGTCAA TGCCTTCCTC AGACCCCCAG 001280 001281 CCTCTGGCAA CCACTGATCT GATGTTTGTC CCTGAAGTTT TGCCTTTTCC AAAATGTCAT ATAAATGAAA TCATACAAAA 001360 001361 TATAACCTTT TGTGTCTGTT TTCTTTCACT TAGCACAATG CTTTTGGATC CATCCTAGTT CACACCTTTT TATCACTGAG 001440 001441 TGGTATTTCA TTTGTTTATA CATTATTCAG TTGATAGACT TTTAAATTAT TTTCAATTTT GTCAACTATG GATAAAGCTG 001520 001521 CTGCAAGTAT TTGTATACAG GTCTTGTCCA TTGTGTGGGC TTATATTTTC AGTAGGCAAA TACCTGGGAG TGAGATTGCC 001600 001601 AGGTAATATG GTAAATATAT GTTGAACATT GTAAGAAACT GCCAGAGAGC TTTTGAAATG ATTCTACCAT TTTGCTTTCT 001680 001681 CACCACAATG AATGAGATTT TTAGTAGATC TGCATCCTTG TTGACATCGC CAGTCATTTT AATTTAAGCA ATTCTAATCA 001760 001761 ATATGTAATG GTGTCTCATC ACAGTTTTTC CTTGCATATT GCTAATGACT AATAATGTTG AGTACATTTG TATGTGCTTA 001840 001841 TTTGTCAACG AGGTCTCTTC TTTGGTAAAG TGTGTGTTCT ATCTTTTGTC CATTTTTAAA AATTGGGTTT TTGTCTATCT 001920 001921 TACTGAACTC TTCTGTGAAT TTAAATATTG TTTCCTAATG TGTTAAATGA AGATAATGCC TATCTCACTG TTTTGTGTGT 002000 002001 GTGTGTGTGA AAATAAATGA AACATATGTA CAATTG |
Predicted Small Protein
Name | ENST00000409590.1_smProtein_1259:1417 |
Length | 53 |
Molecular weight | 5795.8056 |
Aromaticity | 0.0769230769231 |
Instability index | 82.7307692308 |
Isoelectric point | 4.10052490234 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.0401136430548 |
Amino acid sequence | MPSSDPQPLATTDLMFVPEVLPFPKCHINEIIQNITFCVCFLSLSTMLLDPS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHEEEEEELLLEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |