ENST00000412349.2
Revision as of 14:48, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000412349.2 |
Source |
Gencode19 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1574 nt |
Genomic location |
chr1-:64560125..64577888 |
Exon number |
6 |
Exons |
64560125..64560887,64574003..64574076,64576333..64576476,64576566..64576640,64576795..64577052,64577629..64577888 |
Genome context |
|
Sequence |
000001 CTCTCAGTAT GTGTAAACTA TGACATGCAG GCCAATTCAC CTAGAAAGGC CTATTTTCAA AAGCTCATGT CCTCTGAATT 000080
000081 GAGGAACCAC AGATCAGATC AGCCTCTTCA ACCCCCCGCG AGGCTCCCAT TCATGTAAGA CACCCATGGC TTTGTAATGG 000160 000161 CACCCAACGC TCTGGGCTGG CATGAAAATT GTGTGACTCA CATCATGTGC CTCCCCAAGA AGGTGAGGCT GTTGCTGCAA 000240 000241 AGCTGACTAG TTTGTGGAAT GTAATGGATG AGCTAAACTT GGAGCAGGGG GCTGAGACAC AGATTTCCTG TGCTGTCGAG 000320 000321 CTATTGCAGA TCTCAGCAGA TAACAAAGCT ATTATCCTGG CAGAAATGGA AGCATCCTCA AATCCTGTCA GATGGCAGCA 000400 000401 TGGACAAAAA TTACAAGCAA ATGTATTTTT AAGCTGATGC ACTTTCTTAA GTCTGGCTCC TAAAAGCAAA ACATGCTCTT 000480 000481 CTAGGAGAAG TTTTAGTAAA AACATAAGAA TGCTGCTGAG TTTCTTAGCA GGCATTTTGG AGGAAAAGAT TTGGATCAGA 000560 000561 AATTCAGAAA TTACCTGGGC TCACAAATAT ATGCCCCTCC AGCACCATCC TGCATTCTGC TTCCAAGATA CATGAGCTTT 000640 000641 CTGAAGAGCT GGTGAGAATG CTGAAACTTC CTGGCCTTGG TTTCCCATCT GGTAAAATGA GGAAGACCAA AGCTTAACTC 000720 000721 TCACAAGGAA TATGCAGATG GAGTCTCACT CTGTCGCCCA TGCTGGAGTA AAGTGGTGTG ATCTCGGCTC ACTGCAACCT 000800 000801 CTGCCTCCCA GCAGGGAGAA GTCTAAGAGA CAAAATCAAT AAGGCTAGAG AAGATTGGCT TTCTCTGGAT ACTGTACCTT 000880 000881 ATCCATGTGA ACAGGAGATT TTATAGTGAC TTGTTTCAGT ATAAACAAAG AGGACTGGAA TAACTGATTG CTGAGGACTC 000960 000961 CAATCATGGC AGCACTGTAT GATATGAATG TAAAATAAGC ATGACTGACT GCAACAAGAA GGCAGCCTGA ATCTACCTGA 001040 001041 AGAATCCTCA GGCCATCCGA TTTGATGATA TAGTCAGTAG GATTGTTTGG TTTGCTAGTA ACATAAATTC AAAGCTTCAG 001120 001121 GAAGGAGACT GGGCACAGCG GCTCATGCCT GTAATCCCAG CACTTTGGGA GGCCAAGGCG AGTGGATCAT TTGAGGCCAG 001200 001201 CAGTTCTAGA CCAGCCTGGC CAATATGGTG AAACGCCGTC TCTACTAAAA ATACAAAAAT CAGCTGGGCA TGGTGGCACA 001280 001281 TGCTTATAAT CCCATCTACT CAGGAGGCTG AGGCATAAGA ATCGCTTGAA CCCAAGAGGT GGAGGTTGCA GTGAGCCAAG 001360 001361 ATTGTGCCAC TATACTCCAG CCTGGGTGAC AGAGCAAGAC TCTGTCTCAA ACAAAACAAA ACAAAACAAA ACAAAACAAA 001440 001441 ACAAAAACAA CAAAACACAC ACACACAAAC ACCAAAGCTT CAGGAAAAAA AAGGCAGACT AAATTATATG GTAAGTAGGC 001520 001521 TGTTTCATTG AACTGAAATG CAAAAGTAAA CCGGAGATGT AAGTTGTCAC AAGA |
Predicted Small Protein
Name | ENST00000412349.2_smProtein_263:436 |
Length | 58 |
Molecular weight | 6284.028 |
Aromaticity | 0.0350877192982 |
Instability index | 46.5859649123 |
Isoelectric point | 4.37591552734 |
Runs | 11 |
Runs residual | 0.0390350877193 |
Runs probability | 0.0375535963771 |
Amino acid sequence | MDELNLEQGAETQISCAVELLQISADNKAIILAEMEASSNPVRWQHGQKLQANVFLS |
Secondary structure | LLLLLHHHLHHHHHHHHHHHHHHHHLLHHHHHHHHHHLLLLLLHHHHHHHHHLEEEL |
PRMN | - |
PiMo | - |