ENST00000418963.1
Revision as of 15:00, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000418963.1 |
Source |
Gencode19 |
Same with |
lnc-RBKS-2:1 |
Classification |
intronic(AS) |
Length |
2110 nt |
Genomic location |
chr2-:28530558..28533326 |
Exon number |
3 |
Exons |
28530558..28532441,28532804..28532846,28533144..28533326 |
Genome context |
|
Sequence |
000001 GCTCTCAGAG AAGCTTCCAG TGGAACCAAA GGAATACAGA TGGAGGGCCT GGGGAGAGAT GGCCTGAGGG GACCTGCAGA 000080
000081 AGGGATTTAC CTGCTGCCCC TCCCCCAGGG GAGCCAGGAG ACTGAGCTGG GCTGTAAACA CTCCGTGCCT GGTGCAGCCT 000160 000161 GGTCTGCACA GGCTGAGAGG ATGCTCTACT TCTAAACCCC ATAAGGAAAA GGCCCAGGAG GGACGGGGAT GTTGCTGCTG 000240 000241 ATAGCTAAAA ATGATCAAAT TCTTACCATA TGCCAGACCT TATGCTGGAC AATTCACTGA CATTATCCCA CGTAGTAGGC 000320 000321 AGAATTCTAA CGTGACCCCC AAGATTCTCC ACCTTCTGTG TAATCCCCAG GATTGTGAAT GTGATGGATT TCATTCTGGT 000400 000401 AAACAGGTTT TGTTATATGG CACAGATGAC TTTAAGACAG GGAGGCTTTA AATCTGTGAC TAGCAGAAGA CATATGGAAG 000480 000481 GCAGAGATTC AAAATATAAG AGGGATCTGA CGCACCACTA CTGGCTTGAA AATGGAGGGG ACCACATGGC AGAGGACGCA 000560 000561 CGCAGCCTCT AGTTGCTGAG GGTGGTCTCC AGTTGACAGC GGCAAGGTAA CAGGGGCCTC AGTCCTACAA CCACAAGGAA 000640 000641 CTGAACTCTG CCAACATACT GAAAGAGCTT GAAGGAGGAG CATAAGCCTC AGGGGTGAGA TCATAGACCC AGACAAAGCC 000720 000721 TTGATTTTAG TTGCCTAAAA CCCCGAACTG AGAACCCAGG CATCTTGAGT GGGACTCCTA ACCCACAGAA ACTGTGAGAT 000800 000801 TAATAATTAG TGGCGTTTTA AAAGGGTTAA CTTATGATAT TTTTAAAATT AGCAACACAG AAAATCATAC ACCCCATGTG 000880 000881 ATACCCATCA TAACCCTCTC AAGTAGGCTT CACCATTTTA TAGACAAGGA AACAAAGACC CAGGGAAATT AGGAATTTGC 000960 000961 CCAAAGTCAC ATAGCCTGTG AGTGGCAGAG ACAGGTTTAA ACCCAGCTAT GTCTTGACTT TATGGTCAGT GCTCTTCATT 001040 001041 GCCTCATGCA TTTCCTCTCT GTATGAGAAG AGAGCCTCAG ACACATGGTG AAAAGAGTAT GGAACTGTTT CTGTCTGCCT 001120 001121 GGGTGTGGAT GTGCAGAAGG GTCAGAGGAC CTATGCTTTT GTTTTGGTTT TAAATGGTGA AAAGACATAT ACATAGAATC 001200 001201 AACTAGCTGG ATTCAGTTTA GATGATCCCA ATATGCCTTC TTCTCTCCAT CAGGCCTGAT CAGGGTGTTG GCTTTGGCCA 001280 001281 CAGCAGTGTC ACTGAGCTTC TTCACAGCCT GTTTGATCTG GTGCTTGTTG GCTTTGACAT CCACAATGGA CACAAGTTGT 001360 001361 GTTGTTGTCT TCTATCTTCT TCATGGCTGA CTCAGTGGTT GGGGGAACCT GATGATGAAT TATTGGTCAA GCTTGTTTCT 001440 001441 CCTGGGAGTG CTCTTCCAAG CATATTTCTG CTGCCTGCAG AGCCACACTG TCTTGGGCCA CTGGCAGGTG GGTGATGTGT 001520 001521 GGATTGGATC TTCTTTTTGT GGCTGTGGAC ACCTTTAAGC ACTGCCTTCC TGGCCTTCAA AGCATTCGCT TTGGCTTCAG 001600 001601 CTTTGGGAGG GGCAAGAACT TTTTTCACTT TTGGTGCCAT AATGTGAAAA TGAGGACCTA TGTTGAGCCC TCACTCCTCT 001680 001681 AGAAGCCAGC TGTGTGCCCT CGGCAAAGTC AATTAATCAC TCTGAGCCTC AGTTTTTATA ATCTGTATGA GGCCTACTAA 001760 001761 GAATTTCTGC ATTATAACCC TTGAAGGGCT GCAGCTGATG ATCCCATAAA AGTGTGTGAG GGGCCACTGT GAATGAAGTC 001840 001841 CACAGGGCAG ACAGAGGCAC CTGGATGTCA TGTAGATATC ATTTTCTTTT CTTGATGACT GCCAATTTCA ATGTCCTCTG 001920 001921 CCTATAGGCT GGATATGGTC ACTCTGATGG CTTATTTGGA GGAAGTAATT TTAAATAGGT TTTTTTTTTA GAGGAAATGA 002000 002001 TTATTTATTA CATTTATTGA AAAACTACAG AATAAGATGG AAGGTAATTT TTCTTTTTTT CTTGAATTCT TTAAAAGTTA 002080 002081 GTTGACTATT AAAAGCCAAA GTAATAACAA |
Predicted Small Protein
Name | ENST00000418963.1_smProtein_383:571 |
Length | 63 |
Molecular weight | 7395.3244 |
Aromaticity | 0.112903225806 |
Instability index | 67.7225806452 |
Isoelectric point | 8.97784423828 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0350564468212 |
Amino acid sequence | MDFILVNRFCYMAQMTLRQGGFKSVTSRRHMEGRDSKYKRDLTHHYWLENGGDHMAEDAR SL |
Secondary structure | LLEEEELLHHHHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLLEELLLLLHHHHHHHL LL |
PRMN | - |
PiMo | - |