ENST00000418963.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000418963.1

Source

Gencode19

Same with

lnc-RBKS-2:1

Classification

intronic(AS)

Length

2110 nt

Genomic location

chr2-:28530558..28533326

Exon number

3

Exons

28530558..28532441,28532804..28532846,28533144..28533326

Genome context

Sequence
000001 GCTCTCAGAG AAGCTTCCAG TGGAACCAAA GGAATACAGA TGGAGGGCCT GGGGAGAGAT GGCCTGAGGG GACCTGCAGA 000080
000081 AGGGATTTAC CTGCTGCCCC TCCCCCAGGG GAGCCAGGAG ACTGAGCTGG GCTGTAAACA CTCCGTGCCT GGTGCAGCCT 000160
000161 GGTCTGCACA GGCTGAGAGG ATGCTCTACT TCTAAACCCC ATAAGGAAAA GGCCCAGGAG GGACGGGGAT GTTGCTGCTG 000240
000241 ATAGCTAAAA ATGATCAAAT TCTTACCATA TGCCAGACCT TATGCTGGAC AATTCACTGA CATTATCCCA CGTAGTAGGC 000320
000321 AGAATTCTAA CGTGACCCCC AAGATTCTCC ACCTTCTGTG TAATCCCCAG GATTGTGAAT GTGATGGATT TCATTCTGGT 000400
000401 AAACAGGTTT TGTTATATGG CACAGATGAC TTTAAGACAG GGAGGCTTTA AATCTGTGAC TAGCAGAAGA CATATGGAAG 000480
000481 GCAGAGATTC AAAATATAAG AGGGATCTGA CGCACCACTA CTGGCTTGAA AATGGAGGGG ACCACATGGC AGAGGACGCA 000560
000561 CGCAGCCTCT AGTTGCTGAG GGTGGTCTCC AGTTGACAGC GGCAAGGTAA CAGGGGCCTC AGTCCTACAA CCACAAGGAA 000640
000641 CTGAACTCTG CCAACATACT GAAAGAGCTT GAAGGAGGAG CATAAGCCTC AGGGGTGAGA TCATAGACCC AGACAAAGCC 000720
000721 TTGATTTTAG TTGCCTAAAA CCCCGAACTG AGAACCCAGG CATCTTGAGT GGGACTCCTA ACCCACAGAA ACTGTGAGAT 000800
000801 TAATAATTAG TGGCGTTTTA AAAGGGTTAA CTTATGATAT TTTTAAAATT AGCAACACAG AAAATCATAC ACCCCATGTG 000880
000881 ATACCCATCA TAACCCTCTC AAGTAGGCTT CACCATTTTA TAGACAAGGA AACAAAGACC CAGGGAAATT AGGAATTTGC 000960
000961 CCAAAGTCAC ATAGCCTGTG AGTGGCAGAG ACAGGTTTAA ACCCAGCTAT GTCTTGACTT TATGGTCAGT GCTCTTCATT 001040
001041 GCCTCATGCA TTTCCTCTCT GTATGAGAAG AGAGCCTCAG ACACATGGTG AAAAGAGTAT GGAACTGTTT CTGTCTGCCT 001120
001121 GGGTGTGGAT GTGCAGAAGG GTCAGAGGAC CTATGCTTTT GTTTTGGTTT TAAATGGTGA AAAGACATAT ACATAGAATC 001200
001201 AACTAGCTGG ATTCAGTTTA GATGATCCCA ATATGCCTTC TTCTCTCCAT CAGGCCTGAT CAGGGTGTTG GCTTTGGCCA 001280
001281 CAGCAGTGTC ACTGAGCTTC TTCACAGCCT GTTTGATCTG GTGCTTGTTG GCTTTGACAT CCACAATGGA CACAAGTTGT 001360
001361 GTTGTTGTCT TCTATCTTCT TCATGGCTGA CTCAGTGGTT GGGGGAACCT GATGATGAAT TATTGGTCAA GCTTGTTTCT 001440
001441 CCTGGGAGTG CTCTTCCAAG CATATTTCTG CTGCCTGCAG AGCCACACTG TCTTGGGCCA CTGGCAGGTG GGTGATGTGT 001520
001521 GGATTGGATC TTCTTTTTGT GGCTGTGGAC ACCTTTAAGC ACTGCCTTCC TGGCCTTCAA AGCATTCGCT TTGGCTTCAG 001600
001601 CTTTGGGAGG GGCAAGAACT TTTTTCACTT TTGGTGCCAT AATGTGAAAA TGAGGACCTA TGTTGAGCCC TCACTCCTCT 001680
001681 AGAAGCCAGC TGTGTGCCCT CGGCAAAGTC AATTAATCAC TCTGAGCCTC AGTTTTTATA ATCTGTATGA GGCCTACTAA 001760
001761 GAATTTCTGC ATTATAACCC TTGAAGGGCT GCAGCTGATG ATCCCATAAA AGTGTGTGAG GGGCCACTGT GAATGAAGTC 001840
001841 CACAGGGCAG ACAGAGGCAC CTGGATGTCA TGTAGATATC ATTTTCTTTT CTTGATGACT GCCAATTTCA ATGTCCTCTG 001920
001921 CCTATAGGCT GGATATGGTC ACTCTGATGG CTTATTTGGA GGAAGTAATT TTAAATAGGT TTTTTTTTTA GAGGAAATGA 002000
002001 TTATTTATTA CATTTATTGA AAAACTACAG AATAAGATGG AAGGTAATTT TTCTTTTTTT CTTGAATTCT TTAAAAGTTA 002080
002081 GTTGACTATT AAAAGCCAAA GTAATAACAA
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Predicted Small Protein

Name ENST00000418963.1_smProtein_383:571
Length 63
Molecular weight 7395.3244
Aromaticity 0.112903225806
Instability index 67.7225806452
Isoelectric point 8.97784423828
Runs 11
Runs residual 0.0237788018433
Runs probability 0.0350564468212
Amino acid sequence MDFILVNRFCYMAQMTLRQGGFKSVTSRRHMEGRDSKYKRDLTHHYWLENGGDHMAEDAR
SL
Secondary structure LLEEEELLHHHHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLLEELLLLLHHHHHHHL
LL
PRMN -
PiMo -