ENST00000427188.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000427188.1

Source

Gencode19

Same with

lnc-SIK1-4:13,NONHSAT147193

Classification

intergenic

Length

967 nt

Genomic location

chr21-:44890313..44891472

Exon number

2

Exons

44890313..44891198,44891392..44891472

Genome context

Sequence
000001 CACTCACAGT GCGCTCACTC TGAACCTCTG TGCACACGAT GGGCCTGCAT CTCTTCCCAC TATCTGCTAG GAAACACGAG 000080
000081 GAATCATGGG ATTTGCCGCA GTTTGCACCC AGGCCTGTGC GGATGCCCCC CGACTGCCCG AGATGCTGCA CCTGCCACTG 000160
000161 CTGGGGGTGT ACCTGCCTAT GCCCACTCAC AGGGGCACCT CCAGGGTAGC TGCCTGGTGC AGGCATTGGC TCTAAGCAGA 000240
000241 GCAGCACTAT GGGCCCATCT GGGGCTGGCT CTTGCCTGGG CCTGTGAGCA CCATCACAGC CAGCCGATCT GGGAGTATCC 000320
000321 AGGGTGTTCT TGTCATTGCG GACACTGAAT AGCCATTGGT GGGTGGCGAT GGGGGCTTGG AAGCCGAGCA TCAGTGGCAA 000400
000401 TGAGAAGCAG GCCCTGTGGT TTAATTCCGA AGCACATGAA CCCACAGAGC CGCCAACAGT CGTTATTCGG CAGGAGGGGG 000480
000481 TACAGAGACA GCAGCCTGCG GAGCGTTCTA GGCAGGACAG GGCAGCAAAC CTGACATGCG GAGCTGGGGG CAGGGGTAAT 000560
000561 GGGGCCAGGG GGTAATGGCA GGTGAGGCCA TGGCCTAGAG GGTTGCCATG CTTGGTGCAG GGGAGGAGAG GCCCAGGTGT 000640
000641 GGCTGCAGTG GCAGCAGGAG TCAGTGTGGC TGTGCCCAGT GGGATGTTGT CAGAGAATGG ACCTGGCTGC TGGGAAAGGT 000720
000721 GATTGTGTTT GTCTGAGCCA CACTGGACTC TTCTCTGACC AGCAAGCACA TTCTGGAGAT GCGGGGCAGA GACGAGGCCT 000800
000801 CCGTGAGAAC CTTTGAGGTG TGAGGGCCTT GATCTGGGGT GCAGCCTCCA GCTTTCTGCT TACAGAGCAG GACCTGCAGG 000880
000881 AGCTCGCTGA CTGCCTGCAC AGTGGAAGGA AGACCTGTTT CTTTTACTTT CCTTGAGGAG AAAAAATTAA AGTTCTGAGC 000960
000961 AAACGCA
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Predicted Small Protein

Name ENST00000427188.1_smProtein_368:574
Length 69
Molecular weight 7342.9938
Aromaticity 0.0441176470588
Instability index 53.1573529412
Isoelectric point 9.29400634766
Runs 12
Runs residual 0.0359697933227
Runs probability 0.0482394158865
Amino acid sequence MGAWKPSISGNEKQALWFNSEAHEPTEPPTVVIRQEGVQRQQPAERSRQDRAANLTCGAG
GRGNGARG
Secondary structure LLLLLLLLLLLHHHEEEELLLLLLLLLLLEEEEELLLEEELLHHHLLHHHHHHHLLLLLL
LLLLLLLL
PRMN -
PiMo -