ENST00000427439.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000427439.1

Source

Gencode19

Same with

lnc-ATP6V1G3-4:1

Classification

intergenic

Length

1785 nt

Genomic location

chr1-:198975169..198990166

Exon number

3

Exons

198975169..198976558,198977523..198977697,198989947..198990166

Genome context

Sequence
000001 AATAAAGACA TAAAAAACTT AAATGGAGTT CACTCGAATT ATATAGATCC TTATTGGTAA GTTCTGAATA AAATTCTGGT 000080
000081 GGCAAGCTCC TTAAAGTTCC AATTCCAAGC ACAGAGATGT TCATGGAAGG TTTTACATAA CACGTGTAGA ACCTGTCCAT 000160
000161 GGCTGGGTTT TCTTTTGTTC AGTTTTGGGT CTCAGCACCT GGAAGACTAC CTGGCATATG AATTCCTGTG ATCCGGTACA 000240
000241 TACAGAAAAA TATCAAGAGA AGTTAAATTT TAAAATGATG GACCTTTTCC AATTAGATTA CTTCTGATCA ATACAATGTC 000320
000321 TGATTTTTAT AAGATGACAA CTAAAATTCA AATTCGGATG TCAAAAAGGT TTAAATAACC CTCCCTCCGA TCTCTGTCTT 000400
000401 CTTCCTACTC TGTACTCTCT CTGGGGATCT CTTTACATCC CACAGCCATT GAATCTTAAA AGTAATACAA GAAATAATTG 000480
000481 AATGAAATTT CCAAGGACTT CAGAATATAG ATCACTTTTT TTCCCTAACA TCTAGAACAG TATCTAGCGT ATTGACAATA 000560
000561 TCCAATAATA TTTGCTAAAT AAATAAAGAA AAATGCACAC TGAAGAGTCA ACATCATAAA TGAATAAAAA CATATTCAAA 000640
000641 AGTATATCAT TCTGAAATTG TACAATGCAT ACAAATATTT GATGCTAAAA ACTTCTACAA AGATAAAGAA GATCACATAT 000720
000721 GGGAGTTACA ACATTTAGAC TTCTGAAAGA AAATTAATTC CAACCTAGAC TTCTATGCTC CATTTAAAAA ATTAATCAGA 000800
000801 AGACACAGAT TAAGTAAAGC AACTTACAGA TAGGTTAGAT CTAAAAATAT GTATTTGTGA TACACCCTTC TGTAGGAAGA 000880
000881 TATACATCAC CAAAATAATG GAATAAATAA ACAAGACATA GGATTAATGA AAAATGATTA CAACACAGGA GAGGTTGAAA 000960
000961 AGAATTCCTG GAATAATGTT GAAGGGAAAT CCTAAGACAT CAGCCATTCT TCAAGTCTAG AAACCCCAAG GCTATTGAGA 001040
001041 GCATGAAGAC TAAGGAATGA ATGTCTCCAG GAAACAAAAA AGGAACCAAT GAATTCATGA CACATTACCT GGTGAGACTG 001120
001121 ACCATAAGCA AACATAAACA AAACAATTTC CATAGGTATT TTATTGTTTG GAATGTAGCA ATTTATGAAA AAGAAGAGAC 001200
001201 GAGTATTAAC TCCAGTACAA ACAAAGAGTT ATTTGGGTAA GGGTGCAAAT CTTAGTAAAT GACTTGGTTC AGAAGTAAAC 001280
001281 AATATAACAC AACTTTTAAA AAGTTGAGGG GTGAAGACTG AAGTGGTAAT TTAAATACAA AATTCTGATA CAATTTTATT 001360
001361 GAGAGGAGGG AGAGAGGAGT GGAGAGAATT TGGTATCATG GTGAAGAAGT GCTAATTTTA ATGGTGCATA AAAATAAGTC 001440
001441 ATTGGTATCA GTGATACATA TTATTTTGTA ATATGAAGAC TGAAGAAAGA GAAAGGAATA TTTTTCTATT TTATTTTGGT 001520
001521 AAAAATTTTT ATTTCTATTA TCTCCCTCCT TTCAATAAAA TTGTATCAAA ATTTGTGTTT AAATTACAGT TCAGTGTCCC 001600
001601 CTCTCCCTCT TTTGTCCCTG GGGGCCAGAG TTTTTATTAT TATTTTGAGT TATTGAATTT TTAAAAACTA ACACATATTA 001680
001681 GTTTTTGAGA TTTTTTTCTT GTTGTTCTTG GGTTATTGAC AGCAAAGGGG TGGAGGAGGA GAGAGAAGAT AAAATGAGCA 001760
001761 AATAAAAAAA TGGTAAAGTA CACAA
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Predicted Small Protein

Name ENST00000427439.1_smProtein_1472:1663
Length 64
Molecular weight 7768.8883
Aromaticity 0.31746031746
Instability index 86.0784126984
Isoelectric point 9.30133056641
Runs 13
Runs residual 0.0613864593456
Runs probability 0.0630290924408
Amino acid sequence MKTEERERNIFLFYFGKNFYFYYLPPFNKIVSKFVFKLQFSVPSPSFVPGGQSFYYYFEL
LNF
Secondary structure LLLHHHLLEEEEEEELLEEEEEEELLLLLEEELEEEEEEEELLLLLLLLLLLEEEEEEEE
ELL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL
LLL
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