ENST00000588842.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000588842.1

Source

Gencode19

Same with

NONHSAT068510

Classification

intergenic

Length

1200 nt

Genomic location

chr2-:305111..307180

Exon number

2

Exons

305111..306240,307111..307180

Genome context

Sequence
000001 GTGTGTATTA ACACGCCGGC CTCCTCACTA CCTGTGTGTG TATTAACACG CCGGCCTCCT CGCTACCTGT ATCAACTATG 000080
000081 GCCTGAGTAT GATAGACTTA TCCATGGTTT AAACAGAATA TATTGTTTTC AACTTTGAAA ATAAGAATAT GGAAATCCAG 000160
000161 ATGCAGAAAT GTGAGAAGAA AAGAGAGTAA ACAGAGTGGA AGGTCAGGTG ACCTTGCCTG TCATGAATAT GAAGGTCAAG 000240
000241 GTGTGTGAAT TGTGAAATTT CCAAGAGAAC CTCACTGAAG CAAAGAATGA AGAAAGAATT GCATTTGGCC CTGGGAGGGT 000320
000321 GCAGGGGTGA ATGGTGCAGG AGCTAAATCT TTATCATACC CAGAAATCAA CAGCCACTAT TTGAAATCAT CTAAATTCGT 000400
000401 GCTGCTAACC TTCAGTGTAC ACACGAATCA CCTGGGGATC TTACTAAAAG CTAGTTTCTG ATTCACTAAA TCTGTGTGTG 000480
000481 GTGGAAGTTG AGGGCAGAGA AGCTCCCGAG GGTGTCAAGC TGACTCTGAA CCCGACTTTG AGGGTTAAGG TCCCAAATGG 000560
000561 CATCGCCAGC ACCAGGGACA GACACTAAAA TTGTAGAAAT CGTCTCAAGA AATGAACAGC CTCTAAGTCA GATGTTGAAT 000640
000641 GTGAAAGAAA TCAGGGTGTG TACGTGTGTG TGCATTTGTG TGTGCACGTG TGTGCCTGTG TTTGTCTCTG TGCATGTATG 000720
000721 TTTCTATGTG TGCACATGTG TGTATGTGTC TGTACATGTG TGTTTCTGTG TGTGTGCCTG TGTGTGTATT GGCTTAGATC 000800
000801 TGTTCGAGAC TTTTTATTTG ATGAGATCGA TATATGCCAC CACTTTTGGA AAGGACAACG TATATACAAA GACAATGATT 000880
000881 ACTTATGTAA TGTGAACGGA GTCTCTCTTC GACCCTCAAA TGTTTTGTAG AAAGTAATGA TGATGGTGAG GATTATAACA 000960
000961 ATGCGTGTTT CCTGAATAAC AAAAAGGAGT TACAGTACAC TTTTACCTAT TTTTCCAAAG CGCTAGGTCA AGTTTAGCTA 001040
001041 AAGTCTGCTT GGAATTAATG AGGCTTGGAA ATGTAAAATC TCAGAGCAGT AAACATCTCT TTGTCCTAAT GTTCTTATGT 001120
001121 AGCCATTAAA ACTTAAATAT TAATACTAAA ATAACTACTG TAAAATAAAG TAAAAATGTA CGAGAATAAT CAAAATAATT 001200
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Predicted Small Protein

Name ENST00000588842.1_smProtein_713:796
Length 28
Molecular weight 2958.8002
Aromaticity 0.0740740740741
Instability index 56.6259259259
Isoelectric point 6.46954345703
Runs 7
Runs residual 0.0526033279656
Runs probability 0.0359224770989
Amino acid sequence MYVSMCAHVCMCLYMCVSVCVPVCVLA
Secondary structure LEEEHHHHHHHEEEEEEEEEELEEEEL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHHL
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