ENST00000588842.1
Revision as of 18:27, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000588842.1 |
Source |
Gencode19 |
Same with |
NONHSAT068510 |
Classification |
intergenic |
Length |
1200 nt |
Genomic location |
chr2-:305111..307180 |
Exon number |
2 |
Exons |
305111..306240,307111..307180 |
Genome context |
|
Sequence |
000001 GTGTGTATTA ACACGCCGGC CTCCTCACTA CCTGTGTGTG TATTAACACG CCGGCCTCCT CGCTACCTGT ATCAACTATG 000080
000081 GCCTGAGTAT GATAGACTTA TCCATGGTTT AAACAGAATA TATTGTTTTC AACTTTGAAA ATAAGAATAT GGAAATCCAG 000160 000161 ATGCAGAAAT GTGAGAAGAA AAGAGAGTAA ACAGAGTGGA AGGTCAGGTG ACCTTGCCTG TCATGAATAT GAAGGTCAAG 000240 000241 GTGTGTGAAT TGTGAAATTT CCAAGAGAAC CTCACTGAAG CAAAGAATGA AGAAAGAATT GCATTTGGCC CTGGGAGGGT 000320 000321 GCAGGGGTGA ATGGTGCAGG AGCTAAATCT TTATCATACC CAGAAATCAA CAGCCACTAT TTGAAATCAT CTAAATTCGT 000400 000401 GCTGCTAACC TTCAGTGTAC ACACGAATCA CCTGGGGATC TTACTAAAAG CTAGTTTCTG ATTCACTAAA TCTGTGTGTG 000480 000481 GTGGAAGTTG AGGGCAGAGA AGCTCCCGAG GGTGTCAAGC TGACTCTGAA CCCGACTTTG AGGGTTAAGG TCCCAAATGG 000560 000561 CATCGCCAGC ACCAGGGACA GACACTAAAA TTGTAGAAAT CGTCTCAAGA AATGAACAGC CTCTAAGTCA GATGTTGAAT 000640 000641 GTGAAAGAAA TCAGGGTGTG TACGTGTGTG TGCATTTGTG TGTGCACGTG TGTGCCTGTG TTTGTCTCTG TGCATGTATG 000720 000721 TTTCTATGTG TGCACATGTG TGTATGTGTC TGTACATGTG TGTTTCTGTG TGTGTGCCTG TGTGTGTATT GGCTTAGATC 000800 000801 TGTTCGAGAC TTTTTATTTG ATGAGATCGA TATATGCCAC CACTTTTGGA AAGGACAACG TATATACAAA GACAATGATT 000880 000881 ACTTATGTAA TGTGAACGGA GTCTCTCTTC GACCCTCAAA TGTTTTGTAG AAAGTAATGA TGATGGTGAG GATTATAACA 000960 000961 ATGCGTGTTT CCTGAATAAC AAAAAGGAGT TACAGTACAC TTTTACCTAT TTTTCCAAAG CGCTAGGTCA AGTTTAGCTA 001040 001041 AAGTCTGCTT GGAATTAATG AGGCTTGGAA ATGTAAAATC TCAGAGCAGT AAACATCTCT TTGTCCTAAT GTTCTTATGT 001120 001121 AGCCATTAAA ACTTAAATAT TAATACTAAA ATAACTACTG TAAAATAAAG TAAAAATGTA CGAGAATAAT CAAAATAATT 001200 |
Predicted Small Protein
Name | ENST00000588842.1_smProtein_713:796 |
Length | 28 |
Molecular weight | 2958.8002 |
Aromaticity | 0.0740740740741 |
Instability index | 56.6259259259 |
Isoelectric point | 6.46954345703 |
Runs | 7 |
Runs residual | 0.0526033279656 |
Runs probability | 0.0359224770989 |
Amino acid sequence | MYVSMCAHVCMCLYMCVSVCVPVCVLA |
Secondary structure | LEEEHHHHHHHEEEEEEEEEELEEEEL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTTi |