NONHSAT000240

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT000240

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3315 nt

Genomic location

chr1-:1017205..1023016

Exon number

3

Exons

1017205..1019886,1021258..1021392,1022519..1023016

Genome context

Sequence
000001 TTTGCTTTGG CTGACATGCC CGTCCTCTGC CCCACGCAGG CTGTTACAGG CGCTGGAACG CGGACGGGAG CGCCAGCTGC 000080
000081 GTCCGCTGTG GGAACGGAAC CCTCCCAGCC TACAACGGCT CCGAGTGTAG AAGCTGTAGG TCTGCCCGGC TCCCCCCGGC 000160
000161 TCCCTTCTCA CAGCTCCAGC TGTGGGAGAC ACTGTGGGAG TTGCTGTCTG TGTCCCCACC TTGCCCCAGA GCCACTGTCC 000240
000241 ACTGGGGAAC AGCCCCGGGA GCCCCCTCTT CCCGAGTCTG CTGGGCCATT CGGGACAGCT CTGTGGTGAG GGCTGCTCCG 000320
000321 CCCCCTCAGC CCCTCGCTTT CATATTTCCG TCCTGAGATC CCTTCAGGGT GCACGTGGGT GTCCCCGTGG GCTCCGTGCA 000400
000401 CACAGGCTTC CCACAGTTCT GCTATCCCAC AGTTGCTGGC CCGGGTGCGC CATTCCCCAT GAACAGAAGC TCAGGGACCC 000480
000481 CCGGGCGGCC ACATCCTGGG GCTCCGCGCG TGGCCGCCTC CCTCTTCCTG GGCACGTTCT TCATTAGCTC CGGCCTCATC 000560
000561 CTCTCCGTAG CTGGGTTCTT CTACCTCAAG CGCTCCAGTA AACTCCCCAG GGCCTGCTAC AGAAGAAACA AAGCTCCGGC 000640
000641 CCTGCAGCCT GGCGAAGCCG TAAGTAACCC ACATCATCCG GGCTGAGCGT CCCTGGCCGC GTGTGCCTGT GCCAGGCCAT 000720
000721 CCCGAGTCCT CACTCTGCCT TTCTCTCCTT TTCAAGGCTG CAATGATCCC CCCGCCACAG TCCTCAGGTA ACAGCAGCTG 000800
000801 TCGCATCCCC CTGTGGGGTT TCCCATCTCT GGGCCAGTCC CAGGGTGCTC TGTGGGTTTG TCCCCAAACG GGTTTGCCTG 000880
000881 GCTCTGGATC TCGGCCACCC CTGCCCGGGT CCCCAGGAGA CCCACCCACA AGGCAGGGCC AGGGCCGGAT TTGGCTGGTG 000960
000961 CCCCCTGCTC TGGATCTCAG CTGGATTTGG CCGGCGCCCC CTGCCCGCCC CCCTTTAATC CCCGTGACTT CCATGCTCTT 001040
001041 TCCTGTTCCC GAGACGTGGG GTCTGCAGGA AAGGAGGACC CACCACGACA GGGCAGACCC CCAATACCTG CTCCTCCTTG 001120
001121 AAGTCCAGCT CCACCCGAGG ACAGACGCAG CCGGCCTCCG CCAGGCCCTC CTGAGCAGCC ATCGCTTCAG TGGTGCTGGG 001200
001201 TCAGGCGGAC CCAAGAGTCA GCCCGGTTAG GACCCATTTT ATGTGCGGGG CCACAGACAC AGGCTGAGTG ACCGGCGCAC 001280
001281 AGCCACACAG CTCCAAGGCC ATGAGCAGGG CTCACCCGGC CTCCGTCCCC CTGTGCAGAA GTCTGTCATG GGGGCAGGTG 001360
001361 ACCGTGCCTT TAGGGGACAG ACCGTTCTCC ATCAAGGCTG GACGTGCCCC GTCCCTAAAG CAGCCCTGTC TGCAAGTGCC 001440
001441 CAGCAGACCC CACGGTGCCC GAGTGCCCCG GGGCTGCCAG CTTCAACAGC AGACCTTTAA TCTGACTATC CTAGAGTTCA 001520
001521 GAAGTCCAAA ACCAAGGGGC AAACAAGGCC ACACGCTTCC CGAGGCTCCG GGGAGGACGC TGTCTGCCTT CCCAGCCCCT 001600
001601 GCCGGCTCAG GCATCTGTGG CTGCGTTGCC CGTCTCTGTC CCCTGGTCCC ACGGCGTCTC CCCCACCTCT GCGTCTTCTC 001680
001681 TCTCTGCCTC TCTCTCAGGT GGGCCCTGGC CGTTGTTTCA GGGCCTGCCC GGGGAACCCT GGGCGATCAC ACCTGAGACC 001760
001761 CTGACGTAAC CCCctgcaaa gccccttctt ctaaataagg tcacattcga ggtcttgggA CTACGGCCTG CTTGTCGCCC 001840
001841 CCTGAGGTGC ATGATACTCT GGGACCCACA TCTCTGTCTT CGGGGATCGC CTGGCCCTTG TCCAGGCCCC GGGGCCCAGG 001920
001921 GTGTAAATGA GAGGACACAG CCGGGCAGGA GGAAGCCGTC CCTTTCCCGA GCTGGAGCTC TGAGGGCGCC TTAGGGGCAG 002000
002001 GGGGCATCTG GGTTCCCACC TGGTCAGAGT AAACAGCCCC GGGCGCCTGT GCCATATGCC CACTCCCGAG AGCCTCCGGT 002080
002081 GAGGGCTGAG GCCTGCACTG TCCCTGCTGT CCAGGTCCCA CTCTGACCTC GCCTGTCTCT GACCCGTTTC AGTACGGAAG 002160
002161 CCGCGCTACG TCAGGCGGGA GCGGCCCCTG GACAGGGCCA CGGATCCCGC TGCCTTCCCG GGGGAGGCCC GTATCAGCAA 002240
002241 TGTCTGACCT GGAGGCCGAG ACCACGCCAC GCACTTGGCG GCAGGGACCC GGAGGCCGAC CCCTTGGCGG GAACCAGCAC 002320
002321 AAAGTGTTGG CATCGCCCGG CGCCCGGGAC AGTCCTGGGC ACAGCCTCGG CTCTGAGTCC CTCCGCCTCC CAGCGACGGA 002400
002401 CGCCAAAGGG TCCCGGGCCG CCTGAGGCTC CTCCCCACCA CAGCCATCTC GTTTATCGGA CCAGGAGCAG GCATCCATGA 002480
002481 GACCTCAGAG CTTCAGATCG AGGCCTTGGG GGGTCCGGGC CCCCCCAGGA AACACGGTGA GGCCCCAGCG CCTGCAGCCA 002560
002561 AAGCTGGCAC GATCTATGGG GCAGGTGCCG CTCTGCCTAG AAAAGCCAGG GGCTCTGCTG CCGTGCCCTC CAGAGCCCAC 002640
002641 AGCGGGCAGG ACTCCTCCAG CACCACCACA CCCAGTGGCC CGAGACCCCT CTGAGAACAG TGAGGCTGGT CCTCGTGCCG 002720
002721 TTCCAGCCGG TGCCCGGCCA GTGGGGAGGA CACAGCCTAG GAACCAGCTG CCTGAGACCA GGGTGCCTCT GGGCTGTCCT 002800
002801 CCCGCGTGGC GGAGACCCCA AGCACGCAGC CACCCATTTC CGGAGCTGCA GGATAGAGCT TCCTCTTGAT CTCTGTTTTT 002880
002881 AAGCAGAAAT TCATTGTGCA GAAAAGTCCT CCAGAGCTCT GTGGCCCCGC TCGGATCCGC TGGACCCCCA TGCCTGGCTG 002960
002961 ATCCCTGCCC ACGTGGGGCA GGCCCACATC TAACCCCCAC AAGTCACTGC CTCACTGCAC CTGCCAAGGC TGCCCTGGCG 003040
003041 CTGAGTCCTG GGGTCCCTCC CGGAGTTCCT GGGAGAAAGG CGCCGTCGTG GCCGCCTCCC GCACGCCAGG CCCGGGCTCC 003120
003121 ACCGTGGGTC TCAGACGCCC TGCGGCACCG GCACCGTCTG CTTTAGCATG GGACCCCCCT CTGAGGGGTG GCCTGGCCTT 003200
003201 CGGGGTCCCC ACGCTCCTTT GCGAAGTCCA CTGTGGGTGC CATCATGGTC TCCGGGACCT GGGCCAGCGG GAACGTGGGG 003280
003281 GCACTGGGTG TGCTGATATA AAGTCGGCAT TACTC
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Predicted Small Protein

Name NONHSAT000240_smProtein_458:685
Length 76
Molecular weight 8004.1406
Aromaticity 0.0933333333333
Instability index 68.1654666667
Isoelectric point 11.6365356445
Runs 9
Runs residual 0.0289361702128
Runs probability 0.0423658953072
Amino acid sequence MNRSSGTPGRPHPGAPRVAASLFLGTFFISSGLILSVAGFFYLKRSSKLPRACYRRNKAP
ALQPGEAVSNPHHPG
Secondary structure LLLLLLLLLLLLLLHHHHHHHHHHLLLEEEHHHEEEEEEEEEEELLLLLLHHHHHLLLLL
LLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii
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