NONHSAT000240
Revision as of 19:12, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000240 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3315 nt |
Genomic location |
chr1-:1017205..1023016 |
Exon number |
3 |
Exons |
1017205..1019886,1021258..1021392,1022519..1023016 |
Genome context |
|
Sequence |
000001 TTTGCTTTGG CTGACATGCC CGTCCTCTGC CCCACGCAGG CTGTTACAGG CGCTGGAACG CGGACGGGAG CGCCAGCTGC 000080
000081 GTCCGCTGTG GGAACGGAAC CCTCCCAGCC TACAACGGCT CCGAGTGTAG AAGCTGTAGG TCTGCCCGGC TCCCCCCGGC 000160 000161 TCCCTTCTCA CAGCTCCAGC TGTGGGAGAC ACTGTGGGAG TTGCTGTCTG TGTCCCCACC TTGCCCCAGA GCCACTGTCC 000240 000241 ACTGGGGAAC AGCCCCGGGA GCCCCCTCTT CCCGAGTCTG CTGGGCCATT CGGGACAGCT CTGTGGTGAG GGCTGCTCCG 000320 000321 CCCCCTCAGC CCCTCGCTTT CATATTTCCG TCCTGAGATC CCTTCAGGGT GCACGTGGGT GTCCCCGTGG GCTCCGTGCA 000400 000401 CACAGGCTTC CCACAGTTCT GCTATCCCAC AGTTGCTGGC CCGGGTGCGC CATTCCCCAT GAACAGAAGC TCAGGGACCC 000480 000481 CCGGGCGGCC ACATCCTGGG GCTCCGCGCG TGGCCGCCTC CCTCTTCCTG GGCACGTTCT TCATTAGCTC CGGCCTCATC 000560 000561 CTCTCCGTAG CTGGGTTCTT CTACCTCAAG CGCTCCAGTA AACTCCCCAG GGCCTGCTAC AGAAGAAACA AAGCTCCGGC 000640 000641 CCTGCAGCCT GGCGAAGCCG TAAGTAACCC ACATCATCCG GGCTGAGCGT CCCTGGCCGC GTGTGCCTGT GCCAGGCCAT 000720 000721 CCCGAGTCCT CACTCTGCCT TTCTCTCCTT TTCAAGGCTG CAATGATCCC CCCGCCACAG TCCTCAGGTA ACAGCAGCTG 000800 000801 TCGCATCCCC CTGTGGGGTT TCCCATCTCT GGGCCAGTCC CAGGGTGCTC TGTGGGTTTG TCCCCAAACG GGTTTGCCTG 000880 000881 GCTCTGGATC TCGGCCACCC CTGCCCGGGT CCCCAGGAGA CCCACCCACA AGGCAGGGCC AGGGCCGGAT TTGGCTGGTG 000960 000961 CCCCCTGCTC TGGATCTCAG CTGGATTTGG CCGGCGCCCC CTGCCCGCCC CCCTTTAATC CCCGTGACTT CCATGCTCTT 001040 001041 TCCTGTTCCC GAGACGTGGG GTCTGCAGGA AAGGAGGACC CACCACGACA GGGCAGACCC CCAATACCTG CTCCTCCTTG 001120 001121 AAGTCCAGCT CCACCCGAGG ACAGACGCAG CCGGCCTCCG CCAGGCCCTC CTGAGCAGCC ATCGCTTCAG TGGTGCTGGG 001200 001201 TCAGGCGGAC CCAAGAGTCA GCCCGGTTAG GACCCATTTT ATGTGCGGGG CCACAGACAC AGGCTGAGTG ACCGGCGCAC 001280 001281 AGCCACACAG CTCCAAGGCC ATGAGCAGGG CTCACCCGGC CTCCGTCCCC CTGTGCAGAA GTCTGTCATG GGGGCAGGTG 001360 001361 ACCGTGCCTT TAGGGGACAG ACCGTTCTCC ATCAAGGCTG GACGTGCCCC GTCCCTAAAG CAGCCCTGTC TGCAAGTGCC 001440 001441 CAGCAGACCC CACGGTGCCC GAGTGCCCCG GGGCTGCCAG CTTCAACAGC AGACCTTTAA TCTGACTATC CTAGAGTTCA 001520 001521 GAAGTCCAAA ACCAAGGGGC AAACAAGGCC ACACGCTTCC CGAGGCTCCG GGGAGGACGC TGTCTGCCTT CCCAGCCCCT 001600 001601 GCCGGCTCAG GCATCTGTGG CTGCGTTGCC CGTCTCTGTC CCCTGGTCCC ACGGCGTCTC CCCCACCTCT GCGTCTTCTC 001680 001681 TCTCTGCCTC TCTCTCAGGT GGGCCCTGGC CGTTGTTTCA GGGCCTGCCC GGGGAACCCT GGGCGATCAC ACCTGAGACC 001760 001761 CTGACGTAAC CCCctgcaaa gccccttctt ctaaataagg tcacattcga ggtcttgggA CTACGGCCTG CTTGTCGCCC 001840 001841 CCTGAGGTGC ATGATACTCT GGGACCCACA TCTCTGTCTT CGGGGATCGC CTGGCCCTTG TCCAGGCCCC GGGGCCCAGG 001920 001921 GTGTAAATGA GAGGACACAG CCGGGCAGGA GGAAGCCGTC CCTTTCCCGA GCTGGAGCTC TGAGGGCGCC TTAGGGGCAG 002000 002001 GGGGCATCTG GGTTCCCACC TGGTCAGAGT AAACAGCCCC GGGCGCCTGT GCCATATGCC CACTCCCGAG AGCCTCCGGT 002080 002081 GAGGGCTGAG GCCTGCACTG TCCCTGCTGT CCAGGTCCCA CTCTGACCTC GCCTGTCTCT GACCCGTTTC AGTACGGAAG 002160 002161 CCGCGCTACG TCAGGCGGGA GCGGCCCCTG GACAGGGCCA CGGATCCCGC TGCCTTCCCG GGGGAGGCCC GTATCAGCAA 002240 002241 TGTCTGACCT GGAGGCCGAG ACCACGCCAC GCACTTGGCG GCAGGGACCC GGAGGCCGAC CCCTTGGCGG GAACCAGCAC 002320 002321 AAAGTGTTGG CATCGCCCGG CGCCCGGGAC AGTCCTGGGC ACAGCCTCGG CTCTGAGTCC CTCCGCCTCC CAGCGACGGA 002400 002401 CGCCAAAGGG TCCCGGGCCG CCTGAGGCTC CTCCCCACCA CAGCCATCTC GTTTATCGGA CCAGGAGCAG GCATCCATGA 002480 002481 GACCTCAGAG CTTCAGATCG AGGCCTTGGG GGGTCCGGGC CCCCCCAGGA AACACGGTGA GGCCCCAGCG CCTGCAGCCA 002560 002561 AAGCTGGCAC GATCTATGGG GCAGGTGCCG CTCTGCCTAG AAAAGCCAGG GGCTCTGCTG CCGTGCCCTC CAGAGCCCAC 002640 002641 AGCGGGCAGG ACTCCTCCAG CACCACCACA CCCAGTGGCC CGAGACCCCT CTGAGAACAG TGAGGCTGGT CCTCGTGCCG 002720 002721 TTCCAGCCGG TGCCCGGCCA GTGGGGAGGA CACAGCCTAG GAACCAGCTG CCTGAGACCA GGGTGCCTCT GGGCTGTCCT 002800 002801 CCCGCGTGGC GGAGACCCCA AGCACGCAGC CACCCATTTC CGGAGCTGCA GGATAGAGCT TCCTCTTGAT CTCTGTTTTT 002880 002881 AAGCAGAAAT TCATTGTGCA GAAAAGTCCT CCAGAGCTCT GTGGCCCCGC TCGGATCCGC TGGACCCCCA TGCCTGGCTG 002960 002961 ATCCCTGCCC ACGTGGGGCA GGCCCACATC TAACCCCCAC AAGTCACTGC CTCACTGCAC CTGCCAAGGC TGCCCTGGCG 003040 003041 CTGAGTCCTG GGGTCCCTCC CGGAGTTCCT GGGAGAAAGG CGCCGTCGTG GCCGCCTCCC GCACGCCAGG CCCGGGCTCC 003120 003121 ACCGTGGGTC TCAGACGCCC TGCGGCACCG GCACCGTCTG CTTTAGCATG GGACCCCCCT CTGAGGGGTG GCCTGGCCTT 003200 003201 CGGGGTCCCC ACGCTCCTTT GCGAAGTCCA CTGTGGGTGC CATCATGGTC TCCGGGACCT GGGCCAGCGG GAACGTGGGG 003280 003281 GCACTGGGTG TGCTGATATA AAGTCGGCAT TACTC |
Predicted Small Protein
Name | NONHSAT000240_smProtein_458:685 |
Length | 76 |
Molecular weight | 8004.1406 |
Aromaticity | 0.0933333333333 |
Instability index | 68.1654666667 |
Isoelectric point | 11.6365356445 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0423658953072 |
Amino acid sequence | MNRSSGTPGRPHPGAPRVAASLFLGTFFISSGLILSVAGFFYLKRSSKLPRACYRRNKAP ALQPGEAVSNPHHPG |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHHHLLLEEEHHHEEEEEEEEEEELLLLLLHHHHHLLLLL LLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiii |