NONHSAT000582
Revision as of 19:13, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000582 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
682 nt |
Genomic location |
chr1+:4531468..4543341 |
Exon number |
5 |
Exons |
4531468..4531549,4532390..4532512,4542197..4542494,4543003..4543098,4543259..4543341 |
Genome context |
|
Sequence |
000001 TACTGAAAAT ACAAAAACGA GCTGGGTGTG GTGGCACAGG CCTGTAATAC CAGCTACTTG GGAGGCTGAG GCAGGAGAAT 000080
000081 CGCTCATGAG CGTGGGCTCA GCTGGGTTGG GGGCTCAGCT GGGACAATCC CATATGACTT TTCATCCTTC TTCCTGGCCT 000160 000161 GGGGGTCTCA GGAAGCATTT CAAGAGGGCA AAGGTAGAAA TTGCACTGGA AACCAATGGG AGTTTACTTT TCAGTCATGT 000240 000241 GCCACCTGGG AACCAATGAG AGCTGTCTTC TCAGCCACAT GCCTTGTCTG GGGCCCATCT GGAGATGACT TTTCAGTCAC 000320 000321 ATGCCACCTC TGGGAGCCAC TGGGAGCCAA TGGGAGCTAA CTTCTCAGTC ACTTGCCACC TGGGAGCCAA TGGGAACTAT 000400 000401 CTTCTCAATC ATTTGCCACC TGTGGGGAAC ATTGGGAGGT GTCTTTTCAG TGATGTGCCA CCTCTGGGAG CCAATGATAA 000480 000481 CTGACTTCTC AGTGACATGT CCCTAGCAAG ACGCCAGCCT CGTGCTGGGG AGAAGACGGA GGGAGCTGGA GCCCAGCTGC 000560 000561 CCTCTGCCCA CTACTTCCCC TCAGCCGTTG CCCAGAAGGG GCCAAGTCTT GGAGCCGATG TGGCTGTAAG CCAAAGTGCA 000640 000641 GCAGAGTGTA AAACGCTGCC TCTCTCCAGT GGAGAGGGTC TC |
Predicted Small Protein
Name | NONHSAT000582_smProtein_320:505 |
Length | 62 |
Molecular weight | 6700.7551 |
Aromaticity | 0.114754098361 |
Instability index | 48.831147541 |
Isoelectric point | 4.38641357422 |
Runs | 12 |
Runs residual | 0.0439042773695 |
Runs probability | 0.0893687805453 |
Amino acid sequence | MPPLGATGSQWELTSQSLATWEPMGTIFSIICHLWGTLGGVFSVMCHLWEPMITDFSVTC P |
Secondary structure | LLLLLLLLLEEEEELLLLEEELLLLEEEEEHHHHHHHLLLEEEEEEELLLLLEEEEEEEL L |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL L |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii i |