NONHSAT000615

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT000615

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3967 nt

Genomic location

chr1-:5922871..5927712

Exon number

3

Exons

5922871..5924093,5924398..5926518,5927090..5927712

Genome context

Sequence
000001 GGCTTCATGC CCTGGTGCTG TCAGAGCAGC ACGTGGGGCC TGGGGAATTC TCTCTCCTGC CTTTATGGTT TGAAACGGTG 000080
000081 TCCCTCTTGC CACCTCTGAG ATGACTAGGT GCGCATTTGC CGGCTGAGTC TGCCCTTCTA AAAAATCCCA GCTCCCGCGG 000160
000161 CCCAGGTCCA GGTGTGCCTG GAGGAACACC TACCTCCTCA CCTGACGGCC CGCGTGTTTC TGGTAGGTGC CCCTTACAGC 000240
000241 AGAGTGCAGG CTTCCCTGCT CCAGGGAGCT GTGTTTTCTT TTTTGTGGCC CCCTCGATTA TTCCCTGTGG AGATGGCTGC 000320
000321 AGCCGAGCCG CAGTGGGCTG GATGGGCGGT GTCCATGCAG GGAACACAGT GCTTGGATGC TGTCCTGGGA AAGGTGGCGG 000400
000401 CGTCCGTTTC CCCAGCAGGT GTCTTGCTGA GCACCTGTGA CGAGCCTGTC CTGTCCTATA GTGTGTAATG TGTGGGGCCT 000480
000481 TCTCCACACA GGCTGGGGCT GTGGAGAAGA CTCTTTTTGA CATTTCCCCT GCTCCAGGTG CTCCGGTGGG AATGCTTGGT 000560
000561 GAGGACCCCC CAGTCCATGT TCGCTGCAGC GACCCGAACG TCATCTGTGA GACCCAGAAT GTGGGCCCCG GGGAACCACG 000640
000641 GGACATATTT CTGAAGGTGG CCAGTGGTCC AAGCCCGGAG ATCAAAGACT TCTTTGTCAT CATTTACTCG TAAGTGCACA 000720
000721 GGCTTTGGGG ACCTGGAGGC GGTGGCGGAG GAGAGGAGGA GGCAGGCCTG GGGCTGCTGG TGGATTGAAA GTGGGCTTGG 000800
000801 CCCCTTCCTA AAATTGGGGG AGCTTTCGGG CCTTCGCTTT GTGAGGCGGG ATTCTGCTGC GAGTTCAGGG CCCGCAGGGG 000880
000881 TCTAGGGAAG GCACCTTGGA GGGGCACGTG CAGCCTGAGG GACTTGGGAT GCAGCTCCTG CCACCAAGGA GAGACACCAG 000960
000961 TCAGCCTCTG TCCCCAGATA GTGGCAAGGG CCACCCAGAA GCCCCTCATT ACCTTTTTCT TGCTGAGTCC CTAGGCTGAA 001040
001041 CAGCATGAAT GAAGCTGTGG TCCCTCCTGC GGAGAGGCag gactgtggtg gaaatgccca tccctctctc ctccaggcta 001120
001121 aatgacccgg cccctttccc ctcccctcct aagtcggatc cccaagccct gtgagaatcc ttTCAAACTG GTGTGAGCTC 001200
001201 GGAGATTTCC TGCAGTGCTT CTGAGGATGG GGCAGGGGCT AACCTGCACT CAGTGCCCAC CACAGAGGGG CCACGTGACC 001280
001281 ACGTCTCAGA GTGGCTTCCT CGTGAGCCCA TGAAGATGCC TCACCCAGCC CCATTTGACT GTGAAGCAGC AGGCTCTTGG 001360
001361 CCCTAAAATG CTAACAGGGG CTTCCGTGCT CAGGCCGGCA TGACCTCCAG CCCCACCCTG TCTCCTGCGT GGCGCTGCCC 001440
001441 TTGGCTTAGC CTCAGAACCC CTATTGGGGG TGGACACTTG TCCAGGATGT GTGTTTGGCC AAAGCGTGCC TTGTCATTTG 001520
001521 TTTGACATGT GGTTCCTAAG CAGCCCTGCT GCGCCCTGAG AGCCTCTGCT GTGGGTGGGA GATGGGCAGC CAGGGGTGGA 001600
001601 GCCACCAGGC CCTAGCTCTG CCTCCTGGGG CCTGGTCCTC CGGGGCTTTC CCTGCGTGGC CCCAGCTCTG CCTCCTGTGG 001680
001681 CCTGGTCCTC TGGGGCTTTC CCTGCACAGC CTCCTGTCTG CCCACGCTCC TGGCAGCCCT TGTTGGCCTC TCGTGGGCCG 001760
001761 GTGCTGAGTC CTCCGGGACA AGTGCAGATG GCTCCCATCC CACTGCAGGG ATCGCTGGCT GGCGACACCC ACACAGACGT 001840
001841 GGCAGGTCTA CCTCCACTCC CTGCAGCGCG TGGATGTCTC CTGCGTCGCA GGCCAGCTGA CCCGCCTGTC CCTTGTCCTT 001920
001921 CGGGGGACAC AGACAGTGAG GAAAGTGAGA GCTTTCACCT CTCATCCCCA GGAGCTGAAG GTACGGCCTC TCTGGGGGCT 002000
002001 GTTCTGAGCC TCTCCCCAAC CCCAGCCTGG AGACGGGCAG TGGGCATTCA GCTGGAGCAC AGTGGGTGGC CCTGACAGCA 002080
002081 GCTTTTCCAG CGCCTCCAGC GCGCAGACGC TGTTACCAGA GGCCTCTCGG CAGTTGCCTT TCGTTAGATG TGCCATTGTG 002160
002161 GGGTGAGTGA CGTACACACC AACCCCAAAG GCCGGTGTTC AGAATTCCTG GCAAGGTGAA CAGTGACAGG AGCTCTGGTG 002240
002241 TTAGTGAAGC CACAGTTAGA CGGGGTGGGA GGGCGGCCCC TGGTGCCACC AGCTGGCCGG GGTTTTAAGC CCAAGATGGC 002320
002321 TTCAGTTCTG TCTGCGGAGG CAGCGCTTAG GGAATAGTCG CCGTGTGAGA GGAGGGACTT GCCTGGTGTG GACCCAAGTC 002400
002401 GCGGCCACAG TCATGTCAGG GTTGGTTGTG GCCTCAGATT TGGCCGCCCC GGAACCACCC ATGACCTTGG GCTCCCCTGG 002480
002481 CTGATTGGGC TGCAGGCGCC CAGGAGCCCC TTGCTTGCAC ATCCTGAGAG GCTGTGCTCT GACCCGCCTC TCTCGCTCTT 002560
002561 GAAGACAGAC CCCAAAGGTG TCTTCGTGCT GCCGCCTCGT GGGGTGCAGG ACCTGCATGT TGGCGTGAGG CCCCTTAGGG 002640
002641 CCGGCAGCCG CTTTGTCCAT CTCAACCTGG TGGACGTGGA TTGCCACCAG CTGGTGGCCT CCTGGCTCGT GTGCCTCTGC 002720
002721 TGCCGCCAGC CGCTCATCTC CAAGGCCTTT GAGATCATGT TGGCTGCGGG CGAAGGGAAG GGTGTCAACA AGAGGATCAC 002800
002801 CTACACCAAC CCCTACCCCT CCCGGAGGAC ATTCCACCTG CACAGCGACC ACCCGGAGCT GCTGCGGTTC AGAGAGGACT 002880
002881 CCTTCCAGGT GTGGTGGGGC TGTGCCTGGG ACTCCTAGGG GAAGACCCGG GGACCTGAAT GGAGGGCAGT TAGCCTGCAT 002960
002961 TTAGGAGCGA GTTCCTCAAA TCACCAGCAG TCTTCCAAAA GCCCCAGGGC GGTGACAGGT ACCATCCCAT AGTTGGGTGG 003040
003041 GCCCGTTGTA TCTTTAGTAG CTGGAGATTT AGCAAAGTTT CTCCTGAGTG TGGGAAAGGG TGTTGTGCCC AGGGCTTTTC 003120
003121 ATGGTAATGT TAGACAGCTC AGTCTCGGAA ATAAGTGTGC CTTCGAGTCC AAGTAACGCG TCACACTGGC TGAGCACTGG 003200
003201 TTCCCATCCT TGTACCGGGC GCTGAAGTCA AAGGCAGGCC TTGGATGCAC CCGCAGGGCT CCCCTGCCTT GTCAGCTCCC 003280
003281 CTTGGAAATA AACACGACCA TGCAGAGAGG TTGCTGGTGA GAGCGTGGGA CAGCCCGGGG GTGGATGCTG GGATTTGGAT 003360
003361 GCTTATTTCC AGGTCGGGGG TGGAGAGACC TACACCATCG GCTTGCAGTT TGCGCCTAGT CAGAGAGTGG GTGAGGAGGA 003440
003441 GATCCTGATC TACATCAATG ACCATGAGGA CAAAAACGAA GAGGCATTTT GCGTGAAGGT CATCTACCAG TGAGGGCTTG 003520
003521 AGGGTGACGT CCTTCCTGCG GCACCCAGCT GGGGCCTGTC TGTGCCCCTC CTGCCCTGCA GGCTGTCCTC CCCGCCTCTC 003600
003601 TGCAGCCTTT CACTTCAGTG CCCACCTGGC TGACCTGTGC ACTTGGCTGA GGAAGCAGAG ACCGAGCGCT GGTCATTTTG 003680
003681 TAGTACCTGC ATCCAGCTTA GCTGCTGCTG ACACCCAGCA GGCCTGGGTT CCGTGAGCGC GAACTCCGTG GTGGTGGGTC 003760
003761 TGGCTCTGGT GCTGCCATCT ACGCATGTGG GACCCTCGTT ATCGCTGTTG CTCAAAATGT ATTTTATGAA TCATCCTAAA 003840
003841 TGAGAAAATT ATGTTTTTCT TACTGGATTT TGTACAAACA TAATCTATTA TTTGCTATGC AATATTTTAT GCTGGTATTA 003920
003921 TATCTGTTTT TTAAATTGTT GAACAAAATA CTAAACTTTT ACACGTC
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Predicted Small Protein

Name NONHSAT000615_smProtein_1787:2074
Length 96
Molecular weight 9743.8135
Aromaticity 0.0315789473684
Instability index 77.1652631579
Isoelectric point 5.09674072266
Runs 13
Runs residual 0.00779113137174
Runs probability 0.0423206011441
Amino acid sequence MAPIPLQGSLAGDTHTDVAGLPPLPAARGCLLRRRPADPPVPCPSGDTDSEESESFHLSS
PGAEGTASLGAVLSLSPTPAWRRAVGIQLEHSGWP
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELL
LLLLLEEEELEEEELLLLHHHHHHHLEEEELLLLL
PRMN -
PiMo -