NONHSAT001050
Revision as of 19:15, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001050 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2770 nt |
Genomic location |
chr1+:15992766..15995535 |
Exon number |
1 |
Exons |
15992766..15995535 |
Genome context |
|
Sequence |
000001 GTTTCTCTGA ATAGCAGAGG CATCAAATTT TGGTGGGGAA TGAGAGGAGT ATTAGGGGAA AGTTTGAAAA TAGCTCTCCT 000080
000081 GGAGATGGAG GGCACACAGA GTGGTCCTCA GGCTCACCTT GACTGAGTTG ATTCACAGTT ATCCTGCATC AGACCATTAG 000160 000161 ATTTCTTTAG TGCTATGATT ATAATAGGGA TTTTTGAATC ACCAAAAACA GTTTTTAGAT GTTTATGTTC TTTGTTTTAC 000240 000241 TATCAATGTT GTGCTGGTTA AGGGAGAGAA AAGTTCAAGA AGATCTTACA TATTTGAAAG GAAATTGGTA CTCTTGAAGG 000320 000321 CTATGCAACA TGAGTCTTTG AACAAGAATT CCTTGCTACT TTGATTCATT CATCAAATAC TGAGTGCCTG TGTGCCAGGC 000400 000401 ACAGGTGAAC TCTGGGGATT CAGGGGTAAC TAAAACAGAT TGGAACCCTG CCCTTGTGAA GCTTTCAGTC TAGAAGGGAG 000480 000481 ACGTGAAACA AATTTTAGCT TCAAAAGCAA CATCTATTTT TGCCTGTTAG CATGCATTTA TTTTAAAAGT CATATTAGAG 000560 000561 TTACCTGGTT CCACTTCAGA GCAGACTGGG AAAATCAGGC TTACAATGGA ATCAGATGCT GTGGGCCTAA AACAGCTCTT 000640 000641 TAAAAATCTA TTTTTTTAGG CCAGGTGCGT TGGCTCACAC CTGTAATCCC AGCACTTTGG GAGGCCAAGG TGGGTGGATA 000720 000721 TGAGGTCAGG AGGTCGAGAC CAGCCTGGCC AATATGATGA AACCTTACCT CTACTAAAAA TAAAAAATTA GCCGGGCATG 000800 000801 GTGGCACATG CCTGTAGTCC CAGCTACTCG GGAAACTGAG GCAGAAGAAT CGCTTGAACC CGGGAGGCGG AGGTTGCAGT 000880 000881 GAGCCGGGAT CACGTCACTG TACTCCAGCC TGGGCAAGAG TGAGACACCG TCTCAAAAAA AAAAAAAATT TTTTTTTAAA 000960 000961 TGGAATCAGA GAAACCAACA AAATATGTAA CATGTATAAA TGCCTGAGGA GATCAGTTAT TGAGAAATCC ATTTACAATG 001040 001041 CTGGAGGAGA GGGGATGGCC AGGAAAGAAG TGCAACAAAT AAATGGAAGA TGACCCTAAA AATGCACCAG TGACAGTCAG 001120 001121 TCAATCCATC AGACCACCTC ACATGCAGGG TAGAAACATG GAGTGTGCGG CAGCATCCTC CTCACATCCC TTTGTGAGCA 001200 001201 CGGCTGCTCC GGAATACTGA CCATCTGGGC TAGCACGACT TAGCAGAGGG TTCTGCAGGA TGTGCTATTT TAAAGCAGCT 001280 001281 GGGTGCAACT TGTGAAAACG GGAATCTAGA GCAGAACATG TAATCAGCGA TGGCTGGGAT TGGTGGACAG GATTGACAGG 001360 001361 AGTATTTGAG GCTCTACCAG GCCTGTCTAC AGGACAGCTT CATCAAAGGG ACATTTTTTA ACCTGTTATT TTAAATGCCA 001440 001441 CATATATGTT GTAATGCTGA AGCATACAGG TAGAATTTCT GGATCGTAAC TACTAGTGAC TTCTGAGGTT TACAGTTAGA 001520 001521 AAATGTTCTC AAAGGTTTAT CAGTTATGTA TTGATGATTG GTAATCTAGA CCCTCTGGAG GCTGTAGAAT GTGAAAAGAT 001600 001601 ACAGCTGAGC TGACAAGTTT TAGGGCACTA TCTTCTGGAA TGAAATCGGC CAAGAAAATG GTTCAAGGGC ATGGGGGTTA 001680 001681 GAGAATGTTT CTTTTACCTA AAAATGTTAA GCCAACTATG GAAGATTGGG GTCGTGGGGG CATGAAATAC AAAATTATGA 001760 001761 TAATTTATAC AGAACTAGGT TTCTTTATGT TCTGCAAGAA GGTTTTTATT AGCTAATTTG GGGAGGGGGG CATGCTGCAG 001840 001841 TATTTTTTTT CCTGGGAACA TGCATTTCTG ATGGGAAGTT ATTTTGTTTA CAAGAGTTGG TTTTACACAC AACCCTGAAT 001920 001921 GAATGTGTCT ATGGCCTAAA AATGGTAGAC CTGTATTTCC TTCCCGAGGC AGGCTGATTC GTTTCCTGAT TCCTTCTGTC 002000 002001 TGAGATTACC TGATGCTGAC CAGACTTATT TTTCCTTTCC TGAATCTTCA CAGCTGAGTT TATGGCACCC ATCCAAGACC 002080 002081 TTCCCATTTG AATGACTAGA TTTCTATTCT ATCCCCGATC ATCCTTTTGA AATAGTTCTA GTGATAAACT CAGAGAAATT 002160 002161 CAATATATTG ATTGAATTTT ATTTTTTCGC TTTGTATCTA CAACAGAAAT TGATTTGTTC ATTTTTATTT CAAATCTCTT 002240 002241 CATGGCAAGT TGGGCTAATG GACTTTGCAC TCAAGAAAGG TTTGTTTACC AGTTTTGTAG CCATGTTTGG CAAATCTTAG 002320 002321 CAACTAGAAA CCCCGTCCTT TCTTTTCCTT CTTTATATGT TCTTGCAGTT ACTCTTGTAT TGCAAGATTT TCTGACTTTA 002400 002401 AGCTTTGAGA CTACTGCATC TTAAAAGAAG AACTAGGCTG ACTGGCAAAA AGTCTTGCCA GTGGCCCTGT CACTCCCATG 002480 002481 ATGCTTTGGT TTTGAGAGTT GGGAAAACTC TGAGAACTTA AGGGAACCAA ACTCAGGAAT CCCAAAATTG GTGGCATTGT 002560 002561 GCCATTCGTT TAGGGGCTGA ACATAGGACC TGTCTGAAAC TGAGTGAGCT AGATGCATTT GGGTTTGAAT TTTTGTCACA 002640 002641 TACTGAAATG TAAGTCAGCC CTAAATAATC AAAACACTTT ATTTTATTTT TCTTTTTTTA AATAGGAACT TTCTGAAGAA 002720 002721 AAAGTGGTGT GTAAAACATT TGATATTTAA GACAATAAAG TTTTTATCAT |
Predicted Small Protein
Name | NONHSAT001050_smProtein_1082:1219 |
Length | 46 |
Molecular weight | 4843.328 |
Aromaticity | 0.0444444444444 |
Instability index | 74.5088888889 |
Isoelectric point | 5.37652587891 |
Runs | 6 |
Runs residual | 0.0289141414141 |
Runs probability | 0.0257757757758 |
Amino acid sequence | MEDDPKNAPVTVSQSIRPPHMQGRNMECAAASSSHPFVSTAAPEY |
Secondary structure | LLLLLLLLLLEEELLLLLLLLLLLLHHHHEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |