NONHSAT001050

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT001050

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2770 nt

Genomic location

chr1+:15992766..15995535

Exon number

1

Exons

15992766..15995535

Genome context

Sequence
000001 GTTTCTCTGA ATAGCAGAGG CATCAAATTT TGGTGGGGAA TGAGAGGAGT ATTAGGGGAA AGTTTGAAAA TAGCTCTCCT 000080
000081 GGAGATGGAG GGCACACAGA GTGGTCCTCA GGCTCACCTT GACTGAGTTG ATTCACAGTT ATCCTGCATC AGACCATTAG 000160
000161 ATTTCTTTAG TGCTATGATT ATAATAGGGA TTTTTGAATC ACCAAAAACA GTTTTTAGAT GTTTATGTTC TTTGTTTTAC 000240
000241 TATCAATGTT GTGCTGGTTA AGGGAGAGAA AAGTTCAAGA AGATCTTACA TATTTGAAAG GAAATTGGTA CTCTTGAAGG 000320
000321 CTATGCAACA TGAGTCTTTG AACAAGAATT CCTTGCTACT TTGATTCATT CATCAAATAC TGAGTGCCTG TGTGCCAGGC 000400
000401 ACAGGTGAAC TCTGGGGATT CAGGGGTAAC TAAAACAGAT TGGAACCCTG CCCTTGTGAA GCTTTCAGTC TAGAAGGGAG 000480
000481 ACGTGAAACA AATTTTAGCT TCAAAAGCAA CATCTATTTT TGCCTGTTAG CATGCATTTA TTTTAAAAGT CATATTAGAG 000560
000561 TTACCTGGTT CCACTTCAGA GCAGACTGGG AAAATCAGGC TTACAATGGA ATCAGATGCT GTGGGCCTAA AACAGCTCTT 000640
000641 TAAAAATCTA TTTTTTTAGG CCAGGTGCGT TGGCTCACAC CTGTAATCCC AGCACTTTGG GAGGCCAAGG TGGGTGGATA 000720
000721 TGAGGTCAGG AGGTCGAGAC CAGCCTGGCC AATATGATGA AACCTTACCT CTACTAAAAA TAAAAAATTA GCCGGGCATG 000800
000801 GTGGCACATG CCTGTAGTCC CAGCTACTCG GGAAACTGAG GCAGAAGAAT CGCTTGAACC CGGGAGGCGG AGGTTGCAGT 000880
000881 GAGCCGGGAT CACGTCACTG TACTCCAGCC TGGGCAAGAG TGAGACACCG TCTCAAAAAA AAAAAAAATT TTTTTTTAAA 000960
000961 TGGAATCAGA GAAACCAACA AAATATGTAA CATGTATAAA TGCCTGAGGA GATCAGTTAT TGAGAAATCC ATTTACAATG 001040
001041 CTGGAGGAGA GGGGATGGCC AGGAAAGAAG TGCAACAAAT AAATGGAAGA TGACCCTAAA AATGCACCAG TGACAGTCAG 001120
001121 TCAATCCATC AGACCACCTC ACATGCAGGG TAGAAACATG GAGTGTGCGG CAGCATCCTC CTCACATCCC TTTGTGAGCA 001200
001201 CGGCTGCTCC GGAATACTGA CCATCTGGGC TAGCACGACT TAGCAGAGGG TTCTGCAGGA TGTGCTATTT TAAAGCAGCT 001280
001281 GGGTGCAACT TGTGAAAACG GGAATCTAGA GCAGAACATG TAATCAGCGA TGGCTGGGAT TGGTGGACAG GATTGACAGG 001360
001361 AGTATTTGAG GCTCTACCAG GCCTGTCTAC AGGACAGCTT CATCAAAGGG ACATTTTTTA ACCTGTTATT TTAAATGCCA 001440
001441 CATATATGTT GTAATGCTGA AGCATACAGG TAGAATTTCT GGATCGTAAC TACTAGTGAC TTCTGAGGTT TACAGTTAGA 001520
001521 AAATGTTCTC AAAGGTTTAT CAGTTATGTA TTGATGATTG GTAATCTAGA CCCTCTGGAG GCTGTAGAAT GTGAAAAGAT 001600
001601 ACAGCTGAGC TGACAAGTTT TAGGGCACTA TCTTCTGGAA TGAAATCGGC CAAGAAAATG GTTCAAGGGC ATGGGGGTTA 001680
001681 GAGAATGTTT CTTTTACCTA AAAATGTTAA GCCAACTATG GAAGATTGGG GTCGTGGGGG CATGAAATAC AAAATTATGA 001760
001761 TAATTTATAC AGAACTAGGT TTCTTTATGT TCTGCAAGAA GGTTTTTATT AGCTAATTTG GGGAGGGGGG CATGCTGCAG 001840
001841 TATTTTTTTT CCTGGGAACA TGCATTTCTG ATGGGAAGTT ATTTTGTTTA CAAGAGTTGG TTTTACACAC AACCCTGAAT 001920
001921 GAATGTGTCT ATGGCCTAAA AATGGTAGAC CTGTATTTCC TTCCCGAGGC AGGCTGATTC GTTTCCTGAT TCCTTCTGTC 002000
002001 TGAGATTACC TGATGCTGAC CAGACTTATT TTTCCTTTCC TGAATCTTCA CAGCTGAGTT TATGGCACCC ATCCAAGACC 002080
002081 TTCCCATTTG AATGACTAGA TTTCTATTCT ATCCCCGATC ATCCTTTTGA AATAGTTCTA GTGATAAACT CAGAGAAATT 002160
002161 CAATATATTG ATTGAATTTT ATTTTTTCGC TTTGTATCTA CAACAGAAAT TGATTTGTTC ATTTTTATTT CAAATCTCTT 002240
002241 CATGGCAAGT TGGGCTAATG GACTTTGCAC TCAAGAAAGG TTTGTTTACC AGTTTTGTAG CCATGTTTGG CAAATCTTAG 002320
002321 CAACTAGAAA CCCCGTCCTT TCTTTTCCTT CTTTATATGT TCTTGCAGTT ACTCTTGTAT TGCAAGATTT TCTGACTTTA 002400
002401 AGCTTTGAGA CTACTGCATC TTAAAAGAAG AACTAGGCTG ACTGGCAAAA AGTCTTGCCA GTGGCCCTGT CACTCCCATG 002480
002481 ATGCTTTGGT TTTGAGAGTT GGGAAAACTC TGAGAACTTA AGGGAACCAA ACTCAGGAAT CCCAAAATTG GTGGCATTGT 002560
002561 GCCATTCGTT TAGGGGCTGA ACATAGGACC TGTCTGAAAC TGAGTGAGCT AGATGCATTT GGGTTTGAAT TTTTGTCACA 002640
002641 TACTGAAATG TAAGTCAGCC CTAAATAATC AAAACACTTT ATTTTATTTT TCTTTTTTTA AATAGGAACT TTCTGAAGAA 002720
002721 AAAGTGGTGT GTAAAACATT TGATATTTAA GACAATAAAG TTTTTATCAT
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Predicted Small Protein

Name NONHSAT001050_smProtein_1082:1219
Length 46
Molecular weight 4843.328
Aromaticity 0.0444444444444
Instability index 74.5088888889
Isoelectric point 5.37652587891
Runs 6
Runs residual 0.0289141414141
Runs probability 0.0257757757758
Amino acid sequence MEDDPKNAPVTVSQSIRPPHMQGRNMECAAASSSHPFVSTAAPEY
Secondary structure LLLLLLLLLLEEELLLLLLLLLLLLHHHHEELLLLLLLLLLLLLL
PRMN -
PiMo -