NONHSAT001312
Revision as of 19:17, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT001312 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3805 nt |
Genomic location |
chr1+:19923471..19956315 |
Exon number |
5 |
Exons |
19923471..19923603,19943752..19943830,19948594..19948641,19949968..19950077,19952881..19956315 |
Genome context |
|
Sequence |
000001 TCGCGAGACT TTCAGGGGTC GGAGCGCGGG GGCCGGCCGA GAGGAAAGCT GGAGGCGCGG GTGGGGAACA TGTCTGAGTC 000080
000081 GGAGCTCGGC AGGAAGTGGG ACCGGTGTCT GGCGGATGCG GTCGTGAAGA TAGAATCCTG GTAATTGATG TCCACCCGAG 000160 000161 AAATCCCTGC AGATGTTCCA GCCTCTGTCT AGTCCAGATA GCCACAGGAA GGGTACTGGT TTTGGATTAG GAATTGTTTT 000240 000241 CTCACTTACC TTCTTTAAAA GAAGAATGTG GCCATTAGCC TTCGGTTCTG GCATGGGATT AGGAATGGCT TATTCCAACT 000320 000321 GTCAGCATGA TTTCCAGGCT CCATATCTTC TACATGGAAA ATATGTCAAA GAGCAGGAGC AGTGACTTCA CCTGAGAACA 000400 000401 TCCCAGCGGG AGGACAAGAG AAATCATGTT TATTCCTCAG GAATACTGAA GTGCCCTGGA GTAAGCTGCC ATTCTTCTGT 000480 000481 AACAATGTTA TCAGTAATGC TTTAAACTCC AGCACCTGGT TATGCATTTG AAACCAAGTC TGTTTCTTGT TTTGTATTTT 000560 000561 CTCTCTGGAA GTTGTAAGGA GGTGGTCTTA AATAAATTAA ACAAAAAGAG GAAGTCCATT GCATGGCCTT TGTTTCTTCA 000640 000641 CCTTTGGTCT CTGAGCATGA GGAGGACTGT GTGTGAACTG CCAGCAGCTG TAGCCACCTG CTCACAGCCT CTCTGAGAAC 000720 000721 CCCCTGAAAC CAGTTGTTGG GTATCCTTCC CATTTGCCCC CTCAGGCGTA GTTTTCAGAA CTGCTTCCAC CTCGTAATCA 000800 000801 GAAGTTGAAG ATTGCTGCTG CGTGGCCTGA TGGAGATGAC TGATGTCTTA AGGCGCCTTT CCTTCTGTGG CACCTCTTCG 000880 000881 TGTGTTCTCA CCTGGGGACC TGGCAGGGCA CATCTCCGCT GTGCCTACTG CAAGGCGGTC CCACTGCTGC TGTATTAGCA 000960 000961 GGGGAAGAAT CCTGGCTGTG TGGATGGCCC ACTCCATTGA AGTCAAGTCC TGCAGCTTCA TAGAGCTTGA GACAGTCCAA 001040 001041 GCTTCAGCTC TGGAGGGCGG AGGAAAGCTC ATGGCATACC CACCTGGCCG GAGGAGCCCG ATTGGGGTTA ATTTTATCTT 001120 001121 CACGTAGCAG CTGAAGTTTG AGGACAAAAG GGCCACTTCT GATGCCCCTC TGAGTTTGTT CCTGTGGTTT CACTTGAACC 001200 001201 AGGGATGCTA GATGCAAAAG TCATATTTTA GCAATTTCTT CAGACGATAT ACAGAACCCC AGCGCTCAGC CGTTCTTATT 001280 001281 TCTTTTTCCT TATCGTAGAA TTAAGATAGG GAGAGCCCGA TCCCACTTGC CCCTGTatcc tgtaaatgtt gatttatcat 001360 001361 ctactgtaag cgaggcactg ttgtaagcag cagagataaa tggataaata gacacaggct tctgccttca aggagcttag 001440 001441 agtctgatgg aaagacagac gtgcaaacac aactctgaaa gaagtgtttt aatggagaag agaggtgtag gcaaagtaca 001520 001521 ctgagaacaa aggagaagga gcaactatgt ctccctagga tggccccaca ggcgacggaa tgcctgcgct gggacccgaa 001600 001601 gttgactggg aatcccagac agaaggaggg tagcctctgt gtttgctcag gatcatgtaa tgcatattat agctgggaaa 001680 001681 tcgcaagtag ttcagcatag ccagggtgtg taggggcagg ggaaaggcat ggagggggag gctggGCAAT AGGGTACAAC 001760 001761 TCATGTCTGA CTCCAGTTCT GGAACATTGA TTAGACCTTA GTTCTTGCAA GTGCTATAGT GAGTACATTC AGGGTAGCAA 001840 001841 ATACCCTCCC TCAGCCTCCC CACTCCCTTT TCCAGAAAGG TCTGCTAGGC TCTGCCCTGC AAACTGTCCA GGCTCCTCTG 001920 001921 CCCTCTGGGC TTGTTTTCCT CTTTATTGCT ACTTGGCTGT TTTTCACTTG GTCCTCTTCA TTCTATGATT AAGGCAACCC 002000 002001 ATATAATTGA AAGAAAAATA ATGTGCAGCC TGTTTCATCC CTTCCACTTG ttttcttact atttatttat ttatttctga 002080 002081 gatggaattt tgctcttgtt gcccaggctg gagtgcaatg gtggcgatct cggcctgctg caacctccgc ttcctgggtt 002160 002161 caagcgcttc tcctgcctca gcctcccgag tagctgggat tacaggcatg cgccatcaca cctggctaat tttgtatttt 002240 002241 tagtagagac ggtgtttctc cttggtcatg ctggtctcca actcccgacc tcaggtgatc ctcccgcctc ggcctcccaa 002320 002321 agtgctggga ttacaggcgt gagccaccgc acccagccTC CTATTTGCTT TAAAAGTAAT TTCCTggccg gatgcggtgg 002400 002401 ctcacacctg taatcccagc actttgggag gccaaggcag gtggatcatg aggtcaagag atcaagacca tcctggccaa 002480 002481 cattgtaaaa ccctgtctct actaaaaata taaaaatcag ctgggcatgg tggcgcacac ctgtagtccc agctactcag 002560 002561 gaggttgagg caggagaatc atttgaaccc gggaggcaga ggttgcggtg agctgagatc gcgccactgc actccagccc 002640 002641 ggcgacagag cgagaatctg tctcaaaaaa aaaaaaaaaa aaaaaGCATT TTCCTTCCCC AATTTTTCTG TCATTTTCCC 002720 002721 ATCCTCATTC AGGCAGAGAG AAGAATAACA TGCCCCCTTC CAAAAAAGAC AAAACACAAG GTAGCCACAA ATTCCCTAGA 002800 002801 CACATTAGAA AAATAGGGAG TGGAGAGGGG CATTGGAATG AAAGTTCTCT ATCTCATTAG CTGTTAGGCT TTAGGCATTT 002880 002881 ATTTGGATGG ATCCCTTTGG CACCTTGGAA GCACCACTGA AGTGCTCTGA GAAAGGGGTC AGCTGTCTGA GGGAATAGTT 002960 002961 CTGGATAGAG GCCACAGGAA GCACTGGCCA GTTGCTTTAG TTCTAGATAG CTTTGTATTC CCGCCTTGTT GCCCTTAGCG 003040 003041 GAGGCTGGCC CAAAGCACAC TTGATCTTGT CCCCACTCCC TGCCCCCATC TCAGATCAAC CTTCAGAAAG TCCCGGCTTG 003120 003121 TTGGCAAAGG CACACATTCT GTGTTACTCT TAAGTTTCAT TAGAAATTCA AGTCCTCTGG GGCCCTGTTC CCTTGTGGGC 003200 003201 TTGTGCAACT GACTTTGTTT CTTGTCTGCC TTTCTGGAAC CAAATCCAAG GAAATTCATG GGTTTGGGGA GACAGCGATG 003280 003281 GGAACCCAGC AGGGCACAGG ATGCTAGGAT AAAGCTGTGG CGCCCCAAAA GTGGCCTGCT CTGCCAACAT ACATAAATAC 003360 003361 ATACAGTCTG AGCTTGACAC TGTATAATTT GGCCCAGAAC AATATGTATT TTGAGCTCAT TTAGGTGAAT GACTTTGGCA 003440 003441 TTCCATGTAC CCACTAGGGG AAGCTTTATC AGGCTGCATT TGCCTTATGC AGAAGTATGC CTTTGTTCTG AGAAATGGCC 003520 003521 TCAGAACACA CTGTTGAGCT GTCTCCTTTA GTGAGTGTCA TCCTCTCATC CATTTCAAAA GATTGCAGAT GCCGTCTTGA 003600 003601 AGTCCTGCTT GTAAGAAATG CAGGGGTTGG GAATGGAGGA GATGACGATG TAGTTTTGCT TTTAGTTTTC CCAAACCTGT 003680 003681 TTACATTTTT TAAAAATGTA ACCAACCCAT AATTGCATTT TACTTGTCGT GGTTCGATCT GATTGTATTG TCGAAGGACT 003760 003761 ATTTTTGAAC CTGTCCAAAT AAACTCTGCA AAGTATTTCC ACAAG |
Predicted Small Protein
Name | NONHSAT001312_smProtein_521:715 |
Length | 65 |
Molecular weight | 7314.8163 |
Aromaticity | 0.09375 |
Instability index | 59.06875 |
Isoelectric point | 9.94549560547 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.042315845257 |
Amino acid sequence | MHLKPSLFLVLYFLSGSCKEVVLNKLNKKRKSIAWPLFLHLWSLSMRRTVCELPAAVATC SQPL |
Secondary structure | LLLLLLEEEEEHHHLLLHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHLHHHHHHH LLLL |
PRMN | - |
PiMo | - |